62 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109521848	Uncharacterized protein. (203 aa)
	arhgef6	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6. (632 aa)
	PAK3	Non-specific serine/threonine protein kinase. (555 aa)
	rhof	Ras homolog family member F. (211 aa)
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	rhoh	Ras homolog family member H. (189 aa)
	rhov	Ras homolog family member V. (236 aa)
	LOC109512573	Rho GDP dissociation inhibitor (GDI) gamma. (303 aa)
	LOC109513720	Rho GTPase activating protein 27, like. (943 aa)
	ENSHCOP00000001593	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (165 aa)
	LOC109530651	Rho guanine nucleotide exchange factor (GEF) 7a. (726 aa)
	ARHGEF4	Rho guanine nucleotide exchange factor 4. (642 aa)
	LOC109512524	Rho GTPase activating protein 35b. (1514 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	iqgap1	IQ motif containing GTPase activating protein 1. (1652 aa)
	arhgap35	Uncharacterized protein. (1552 aa)
	git2	G protein-coupled receptor kinase interacting ArfGAP 2a. (760 aa)
	LOC109509055	Uncharacterized protein. (95 aa)
	LOC109520932	Uncharacterized protein. (689 aa)
	LOC109511299	Uncharacterized protein. (192 aa)
	Daam2	Uncharacterized protein. (76 aa)
	LOC109512188	Synaptic Ras GTPase activating protein 1b. (1220 aa)
	nck1	Cytoplasmic protein. (393 aa)
	ENSHCOP00000009446	Uncharacterized protein. (69 aa)
	ARHGAP12	Rho GTPase activating protein 12. (816 aa)
	git1	G protein-coupled receptor kinase interacting ArfGAP 1. (698 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	LOC109514177	IQ motif containing GTPase activating protein 2. (1555 aa)
	arhgdia	Rho GDP dissociation inhibitor (GDI) alpha. (205 aa)
	pak5	Non-specific serine/threonine protein kinase. (723 aa)
	LOC109530943	Spermatogenesis associated 13. (1167 aa)
	PAK2	Non-specific serine/threonine protein kinase. (516 aa)
	pak2	Non-specific serine/threonine protein kinase. (530 aa)
	LOC109526044	G protein-coupled receptor kinase interacting ArfGAP 2b. (740 aa)
	pak6	Non-specific serine/threonine protein kinase. (665 aa)
	myo9a	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2292 aa)
	LOC109528056	Uncharacterized protein. (191 aa)
	LOC109509630	Uncharacterized protein. (214 aa)
	pak4	Non-specific serine/threonine protein kinase. (646 aa)
	LOC109511100	Protein kinase N1a. (768 aa)
	pkn2	Protein kinase N2. (982 aa)
	LOC109507788	Uncharacterized protein. (193 aa)
	diaph3	Diaphanous-related formin 3. (1095 aa)
	LOC109526350	Ras homolog family member Ub. (244 aa)
	LOC109518185	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2216 aa)
	LOC109516891	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1732 aa)
	RHOB	Ras homolog family member B. (200 aa)
	ABR	ABR activator of RhoGEF and GTPase. (1104 aa)
	rock2	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1338 aa)
	LOC109512743	Rho GTPase activating protein 27. (807 aa)
	LOC109523422	BCR activator of RhoGEF and GTPase. (975 aa)
	LOC109531556	Uncharacterized protein. (259 aa)
	LOC109529292	Rac family small GTPase 3b. (124 aa)
	arhgap1	Rho GTPase activating protein 1. (407 aa)
	LOC109529255	Uncharacterized protein. (1038 aa)
	RND1	Rho family GTPase 1. (232 aa)
	PKN1	Protein kinase N1. (783 aa)
	LOC109510807	Non-specific serine/threonine protein kinase. (566 aa)
	LOC109521595	Uncharacterized protein. (191 aa)
	arhgap5	Rho GTPase activating protein 5. (1494 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABR	ARHGAP12	ENSHCOP00000022483	ENSHCOP00000009929	ABR activator of RhoGEF and GTPase.	Rho GTPase activating protein 12.	0.405
ABR	Daam2	ENSHCOP00000022483	ENSHCOP00000007656	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.404
ABR	ENSHCOP00000001593	ENSHCOP00000022483	ENSHCOP00000001593	ABR activator of RhoGEF and GTPase.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.634
ABR	LOC109507788	ENSHCOP00000022483	ENSHCOP00000017424	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.433
ABR	LOC109511299	ENSHCOP00000022483	ENSHCOP00000007629	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.413
ABR	LOC109511764	ENSHCOP00000022483	ENSHCOP00000005171	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.433
ABR	LOC109512743	ENSHCOP00000022483	ENSHCOP00000023020	ABR activator of RhoGEF and GTPase.	Rho GTPase activating protein 27.	0.405
ABR	LOC109513720	ENSHCOP00000022483	ENSHCOP00000001491	ABR activator of RhoGEF and GTPase.	Rho GTPase activating protein 27, like.	0.405
ABR	LOC109516891	ENSHCOP00000022483	ENSHCOP00000021822	ABR activator of RhoGEF and GTPase.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.634
ABR	LOC109518185	ENSHCOP00000022483	ENSHCOP00000021610	ABR activator of RhoGEF and GTPase.	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.634
ABR	LOC109521595	ENSHCOP00000022483	ENSHCOP00000027610	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.486
ABR	LOC109522387	ENSHCOP00000022483	ENSHCOP00000004882	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.433
ABR	LOC109528056	ENSHCOP00000022483	ENSHCOP00000014876	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.426
ABR	LOC109528419	ENSHCOP00000022483	ENSHCOP00000001291	ABR activator of RhoGEF and GTPase.	Ras homolog gene family, member Aa.	0.433
ABR	LOC109529292	ENSHCOP00000022483	ENSHCOP00000026731	ABR activator of RhoGEF and GTPase.	Rac family small GTPase 3b.	0.413
ABR	RAC1	ENSHCOP00000022483	ENSHCOP00000011151	ABR activator of RhoGEF and GTPase.	Rac family small GTPase 1.	0.413
ABR	RHOB	ENSHCOP00000022483	ENSHCOP00000022445	ABR activator of RhoGEF and GTPase.	Ras homolog family member B.	0.433
ABR	RND1	ENSHCOP00000022483	ENSHCOP00000027435	ABR activator of RhoGEF and GTPase.	Rho family GTPase 1.	0.433
ABR	arhgap1	ENSHCOP00000022483	ENSHCOP00000027064	ABR activator of RhoGEF and GTPase.	Rho GTPase activating protein 1.	0.546
ABR	myo9a	ENSHCOP00000022483	ENSHCOP00000014577	ABR activator of RhoGEF and GTPase.	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.634