14 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	LOC109512524	Rho GTPase activating protein 35b. (1514 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	arhgap35	Uncharacterized protein. (1552 aa)
	Daam2	Uncharacterized protein. (76 aa)
	LOC109512188	Synaptic Ras GTPase activating protein 1b. (1220 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	LOC109511100	Protein kinase N1a. (768 aa)
	pkn2	Protein kinase N2. (982 aa)
	rock2	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1338 aa)
	LOC109529255	Uncharacterized protein. (1038 aa)
	PKN1	Protein kinase N1. (783 aa)
	arhgap5	Rho GTPase activating protein 5. (1494 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Daam2	LOC109511764	ENSHCOP00000007656	ENSHCOP00000005171	Uncharacterized protein.	Uncharacterized protein.	0.950
Daam2	LOC109522387	ENSHCOP00000007656	ENSHCOP00000004882	Uncharacterized protein.	Uncharacterized protein.	0.950
Daam2	LOC109528419	ENSHCOP00000007656	ENSHCOP00000001291	Uncharacterized protein.	Ras homolog gene family, member Aa.	0.950
Daam2	LOC109529255	ENSHCOP00000007656	ENSHCOP00000027302	Uncharacterized protein.	Uncharacterized protein.	0.900
Daam2	rnd3	ENSHCOP00000007656	ENSHCOP00000010640	Uncharacterized protein.	Rho family GTPase 3a.	0.498
Daam2	rock2	ENSHCOP00000007656	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.404
LOC109511100	LOC109511764	ENSHCOP00000015506	ENSHCOP00000005171	Protein kinase N1a.	Uncharacterized protein.	0.965
LOC109511100	LOC109522387	ENSHCOP00000015506	ENSHCOP00000004882	Protein kinase N1a.	Uncharacterized protein.	0.965
LOC109511100	LOC109528419	ENSHCOP00000015506	ENSHCOP00000001291	Protein kinase N1a.	Ras homolog gene family, member Aa.	0.965
LOC109511100	pkn2	ENSHCOP00000015506	ENSHCOP00000016019	Protein kinase N1a.	Protein kinase N2.	0.905
LOC109511100	rnd3	ENSHCOP00000015506	ENSHCOP00000010640	Protein kinase N1a.	Rho family GTPase 3a.	0.665
LOC109511764	Daam2	ENSHCOP00000005171	ENSHCOP00000007656	Uncharacterized protein.	Uncharacterized protein.	0.950
LOC109511764	LOC109511100	ENSHCOP00000005171	ENSHCOP00000015506	Uncharacterized protein.	Protein kinase N1a.	0.965
LOC109511764	LOC109512524	ENSHCOP00000005171	ENSHCOP00000004843	Uncharacterized protein.	Rho GTPase activating protein 35b.	0.964
LOC109511764	LOC109529255	ENSHCOP00000005171	ENSHCOP00000027302	Uncharacterized protein.	Uncharacterized protein.	0.947
LOC109511764	PKN1	ENSHCOP00000005171	ENSHCOP00000027481	Uncharacterized protein.	Protein kinase N1.	0.665
LOC109511764	arhgap35	ENSHCOP00000005171	ENSHCOP00000005275	Uncharacterized protein.	Uncharacterized protein.	0.964
LOC109511764	arhgap5	ENSHCOP00000005171	ENSHCOP00000028304	Uncharacterized protein.	Rho GTPase activating protein 5.	0.964
LOC109511764	pkn2	ENSHCOP00000005171	ENSHCOP00000016019	Uncharacterized protein.	Protein kinase N2.	0.965
LOC109511764	rock2	ENSHCOP00000005171	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727