6 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	Daam2	Uncharacterized protein. (76 aa)
	LOC109511100	Protein kinase N1a. (768 aa)
	pkn2	Protein kinase N2. (982 aa)
	LOC109529255	Uncharacterized protein. (1038 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Daam2	LOC109522387	ENSHCOP00000007656	ENSHCOP00000004882	Uncharacterized protein.	Uncharacterized protein.	0.950
Daam2	LOC109528419	ENSHCOP00000007656	ENSHCOP00000001291	Uncharacterized protein.	Ras homolog gene family, member Aa.	0.950
Daam2	LOC109529255	ENSHCOP00000007656	ENSHCOP00000027302	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC109511100	LOC109522387	ENSHCOP00000015506	ENSHCOP00000004882	Protein kinase N1a.	Uncharacterized protein.	0.965
LOC109511100	LOC109528419	ENSHCOP00000015506	ENSHCOP00000001291	Protein kinase N1a.	Ras homolog gene family, member Aa.	0.965
LOC109511100	pkn2	ENSHCOP00000015506	ENSHCOP00000016019	Protein kinase N1a.	Protein kinase N2.	0.905
LOC109522387	Daam2	ENSHCOP00000004882	ENSHCOP00000007656	Uncharacterized protein.	Uncharacterized protein.	0.950
LOC109522387	LOC109511100	ENSHCOP00000004882	ENSHCOP00000015506	Uncharacterized protein.	Protein kinase N1a.	0.965
LOC109522387	LOC109529255	ENSHCOP00000004882	ENSHCOP00000027302	Uncharacterized protein.	Uncharacterized protein.	0.947
LOC109522387	pkn2	ENSHCOP00000004882	ENSHCOP00000016019	Uncharacterized protein.	Protein kinase N2.	0.965
LOC109528419	Daam2	ENSHCOP00000001291	ENSHCOP00000007656	Ras homolog gene family, member Aa.	Uncharacterized protein.	0.950
LOC109528419	LOC109511100	ENSHCOP00000001291	ENSHCOP00000015506	Ras homolog gene family, member Aa.	Protein kinase N1a.	0.965
LOC109528419	LOC109529255	ENSHCOP00000001291	ENSHCOP00000027302	Ras homolog gene family, member Aa.	Uncharacterized protein.	0.947
LOC109528419	pkn2	ENSHCOP00000001291	ENSHCOP00000016019	Ras homolog gene family, member Aa.	Protein kinase N2.	0.965
LOC109529255	Daam2	ENSHCOP00000027302	ENSHCOP00000007656	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC109529255	LOC109522387	ENSHCOP00000027302	ENSHCOP00000004882	Uncharacterized protein.	Uncharacterized protein.	0.947
LOC109529255	LOC109528419	ENSHCOP00000027302	ENSHCOP00000001291	Uncharacterized protein.	Ras homolog gene family, member Aa.	0.947
pkn2	LOC109511100	ENSHCOP00000016019	ENSHCOP00000015506	Protein kinase N2.	Protein kinase N1a.	0.905
pkn2	LOC109522387	ENSHCOP00000016019	ENSHCOP00000004882	Protein kinase N2.	Uncharacterized protein.	0.965
pkn2	LOC109528419	ENSHCOP00000016019	ENSHCOP00000001291	Protein kinase N2.	Ras homolog gene family, member Aa.	0.965