49 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	robo1	Roundabout, axon guidance receptor, homolog 1 (Drosophila). (1585 aa)
	LOC109532026	RGM domain family, member D. (433 aa)
	slit2	Slit homolog 2 (Drosophila). (856 aa)
	ENSHCOP00000001285	EGF-like domain-containing protein. (122 aa)
	ENSHCOP00000001289	Uncharacterized protein. (255 aa)
	ENSHCOP00000001355	Uncharacterized protein. (375 aa)
	LOC109524041	Netrin 2. (574 aa)
	appl2	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2. (663 aa)
	DSCAML1	DS cell adhesion molecule like 1. (1828 aa)
	LOC109526414	Down syndrome cell adhesion molecule like 1. (1472 aa)
	ENSHCOP00000005899	Uncharacterized protein. (122 aa)
	robo4	Roundabout, axon guidance receptor, homolog 4 (Drosophila). (911 aa)
	robo3	Roundabout, axon guidance receptor, homolog 3 (Drosophila). (1367 aa)
	LOC109511719	PID domain-containing protein. (160 aa)
	Igdcc3	Immunoglobulin superfamily, DCC subclass, member 3. (412 aa)
	ENSHCOP00000006901	Repulsive guidance molecule BMP co-receptor a. (423 aa)
	LOC109511389	Slit homolog 1b (Drosophila). (1430 aa)
	LOC109508475	Netrin 1b. (601 aa)
	flrt3	Fibronectin leucine rich transmembrane 3. (650 aa)
	LOC109512911	Down syndrome cell adhesion molecule b. (1894 aa)
	ENSHCOP00000009641	Unc-5 netrin receptor B. (911 aa)
	LOC109531173	Down syndrome cell adhesion molecule a. (2009 aa)
	Slitrk5	SLIT and NTRK-like family, member 5a. (883 aa)
	ENSHCOP00000013704	Nyctalopin. (458 aa)
	trim9	Tripartite motif containing 9. (718 aa)
	LOC109507053	Netrin 5. (634 aa)
	NEO1	Neogenin 1. (1180 aa)
	Neo1	Ig-like domain-containing protein. (108 aa)
	NTN1	Netrin 1. (613 aa)
	ntn4	Netrin 4. (627 aa)
	ENSHCOP00000015240	Uncharacterized protein. (388 aa)
	ENSHCOP00000016048	LRRNT domain-containing protein. (173 aa)
	ENSHCOP00000016756	Uncharacterized protein. (469 aa)
	LOC109527170	Uncharacterized protein. (682 aa)
	fndc1	Fibronectin type III domain containing 1. (1493 aa)
	robo2	Roundabout, axon guidance receptor, homolog 2 (Drosophila). (1202 aa)
	LOC109529083	Slit homolog 3 (Drosophila). (1472 aa)
	ENSHCOP00000020496	Si:dkey-71h2.2. (146 aa)
	ENSHCOP00000021048	Uncharacterized protein. (596 aa)
	ENSHCOP00000021073	Uncharacterized protein. (551 aa)
	epx	Myeloid-specific peroxidase. (781 aa)
	Draxin	Dorsal inhibitory axon guidance protein. (150 aa)
	appl1	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1. (709 aa)
	rgmb	Repulsive guidance molecule BMP co-receptor b. (464 aa)
	dcc	DCC netrin 1 receptor. (1445 aa)
	LOC109527560	Leucine rich repeat containing 3Ca. (259 aa)
	slit1	Slit homolog 1a (Drosophila). (1514 aa)
	NTNG2	Uncharacterized protein. (583 aa)
	ENSHCOP00000028390	Uncharacterized protein. (249 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSCAML1	ENSHCOP00000016756	ENSHCOP00000004853	ENSHCOP00000016756	DS cell adhesion molecule like 1.	Uncharacterized protein.	0.429
DSCAML1	LOC109507053	ENSHCOP00000004853	ENSHCOP00000013910	DS cell adhesion molecule like 1.	Netrin 5.	0.541
DSCAML1	LOC109508475	ENSHCOP00000004853	ENSHCOP00000007079	DS cell adhesion molecule like 1.	Netrin 1b.	0.541
DSCAML1	LOC109524041	ENSHCOP00000004853	ENSHCOP00000002137	DS cell adhesion molecule like 1.	Netrin 2.	0.541
DSCAML1	LOC109531173	ENSHCOP00000004853	ENSHCOP00000010523	DS cell adhesion molecule like 1.	Down syndrome cell adhesion molecule a.	0.400
DSCAML1	NEO1	ENSHCOP00000004853	ENSHCOP00000014708	DS cell adhesion molecule like 1.	Neogenin 1.	0.488
DSCAML1	NTN1	ENSHCOP00000004853	ENSHCOP00000014817	DS cell adhesion molecule like 1.	Netrin 1.	0.541
DSCAML1	Neo1	ENSHCOP00000004853	ENSHCOP00000014714	DS cell adhesion molecule like 1.	Ig-like domain-containing protein.	0.488
DSCAML1	dcc	ENSHCOP00000004853	ENSHCOP00000025889	DS cell adhesion molecule like 1.	DCC netrin 1 receptor.	0.488
Draxin	ENSHCOP00000016756	ENSHCOP00000024769	ENSHCOP00000016756	Dorsal inhibitory axon guidance protein.	Uncharacterized protein.	0.648
Draxin	Igdcc3	ENSHCOP00000024769	ENSHCOP00000006479	Dorsal inhibitory axon guidance protein.	Immunoglobulin superfamily, DCC subclass, member 3.	0.617
Draxin	LOC109507053	ENSHCOP00000024769	ENSHCOP00000013910	Dorsal inhibitory axon guidance protein.	Netrin 5.	0.644
Draxin	LOC109508475	ENSHCOP00000024769	ENSHCOP00000007079	Dorsal inhibitory axon guidance protein.	Netrin 1b.	0.644
Draxin	LOC109524041	ENSHCOP00000024769	ENSHCOP00000002137	Dorsal inhibitory axon guidance protein.	Netrin 2.	0.686
Draxin	LOC109527170	ENSHCOP00000024769	ENSHCOP00000017580	Dorsal inhibitory axon guidance protein.	Uncharacterized protein.	0.617
Draxin	NEO1	ENSHCOP00000024769	ENSHCOP00000014708	Dorsal inhibitory axon guidance protein.	Neogenin 1.	0.699
Draxin	NTN1	ENSHCOP00000024769	ENSHCOP00000014817	Dorsal inhibitory axon guidance protein.	Netrin 1.	0.644
Draxin	NTNG2	ENSHCOP00000024769	ENSHCOP00000028272	Dorsal inhibitory axon guidance protein.	Uncharacterized protein.	0.483
Draxin	Neo1	ENSHCOP00000024769	ENSHCOP00000014714	Dorsal inhibitory axon guidance protein.	Ig-like domain-containing protein.	0.699
Draxin	dcc	ENSHCOP00000024769	ENSHCOP00000025889	Dorsal inhibitory axon guidance protein.	DCC netrin 1 receptor.	0.699