8 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109532026	RGM domain family, member D. (433 aa)
	Igdcc3	Immunoglobulin superfamily, DCC subclass, member 3. (412 aa)
	LOC109507053	Netrin 5. (634 aa)
	ENSHCOP00000015240	Uncharacterized protein. (388 aa)
	ENSHCOP00000016756	Uncharacterized protein. (469 aa)
	LOC109527170	Uncharacterized protein. (682 aa)
	rgmb	Repulsive guidance molecule BMP co-receptor b. (464 aa)
	NTNG2	Uncharacterized protein. (583 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000015240	ENSHCOP00000016756	ENSHCOP00000015240	ENSHCOP00000016756	Uncharacterized protein.	Uncharacterized protein.	0.905
ENSHCOP00000016756	ENSHCOP00000015240	ENSHCOP00000016756	ENSHCOP00000015240	Uncharacterized protein.	Uncharacterized protein.	0.905
ENSHCOP00000016756	Igdcc3	ENSHCOP00000016756	ENSHCOP00000006479	Uncharacterized protein.	Immunoglobulin superfamily, DCC subclass, member 3.	0.900
ENSHCOP00000016756	LOC109507053	ENSHCOP00000016756	ENSHCOP00000013910	Uncharacterized protein.	Netrin 5.	0.763
ENSHCOP00000016756	LOC109527170	ENSHCOP00000016756	ENSHCOP00000017580	Uncharacterized protein.	Uncharacterized protein.	0.684
ENSHCOP00000016756	LOC109532026	ENSHCOP00000016756	ENSHCOP00000000658	Uncharacterized protein.	RGM domain family, member D.	0.723
ENSHCOP00000016756	NTNG2	ENSHCOP00000016756	ENSHCOP00000028272	Uncharacterized protein.	Uncharacterized protein.	0.604
ENSHCOP00000016756	rgmb	ENSHCOP00000016756	ENSHCOP00000025407	Uncharacterized protein.	Repulsive guidance molecule BMP co-receptor b.	0.517
Igdcc3	ENSHCOP00000016756	ENSHCOP00000006479	ENSHCOP00000016756	Immunoglobulin superfamily, DCC subclass, member 3.	Uncharacterized protein.	0.900
Igdcc3	LOC109507053	ENSHCOP00000006479	ENSHCOP00000013910	Immunoglobulin superfamily, DCC subclass, member 3.	Netrin 5.	0.604
Igdcc3	LOC109532026	ENSHCOP00000006479	ENSHCOP00000000658	Immunoglobulin superfamily, DCC subclass, member 3.	RGM domain family, member D.	0.455
Igdcc3	NTNG2	ENSHCOP00000006479	ENSHCOP00000028272	Immunoglobulin superfamily, DCC subclass, member 3.	Uncharacterized protein.	0.604
Igdcc3	rgmb	ENSHCOP00000006479	ENSHCOP00000025407	Immunoglobulin superfamily, DCC subclass, member 3.	Repulsive guidance molecule BMP co-receptor b.	0.455
LOC109507053	ENSHCOP00000016756	ENSHCOP00000013910	ENSHCOP00000016756	Netrin 5.	Uncharacterized protein.	0.763
LOC109507053	Igdcc3	ENSHCOP00000013910	ENSHCOP00000006479	Netrin 5.	Immunoglobulin superfamily, DCC subclass, member 3.	0.604
LOC109507053	LOC109527170	ENSHCOP00000013910	ENSHCOP00000017580	Netrin 5.	Uncharacterized protein.	0.604
LOC109507053	LOC109532026	ENSHCOP00000013910	ENSHCOP00000000658	Netrin 5.	RGM domain family, member D.	0.414
LOC109527170	ENSHCOP00000016756	ENSHCOP00000017580	ENSHCOP00000016756	Uncharacterized protein.	Uncharacterized protein.	0.684
LOC109527170	LOC109507053	ENSHCOP00000017580	ENSHCOP00000013910	Uncharacterized protein.	Netrin 5.	0.604
LOC109527170	LOC109532026	ENSHCOP00000017580	ENSHCOP00000000658	Uncharacterized protein.	RGM domain family, member D.	0.455