(12 nodes) Mixed, incl. Intermediate filament head, DNA-binding domain, and Interphotoreceptor matrix network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109526991	Calcium binding protein 5b. (162 aa)
	LOC109523218	IF rod domain-containing protein; Belongs to the intermediate filament family. (485 aa)
	rbp3	Retinol binding protein 3. (617 aa)
	cplx4	Complexin 4a. (159 aa)
	LOC109511649	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (229 aa)
	ina	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family. (482 aa)
	LOC109522019	Guanylate kinase 1b. (197 aa)
	LOC109522426	Ankyrin repeat domain 33Ab. (416 aa)
	ENSHCOP00000019657	Si:ch211-103a14.5. (124 aa)
	ENSHCOP00000020224	Clusterin; Belongs to the clusterin family. (439 aa)
	pdc	Phosducin b. (235 aa)
	LOC109521628	Opsin 1 (cone pigments), short-wave-sensitive 2. (322 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000019657	ENSHCOP00000020224	ENSHCOP00000019657	ENSHCOP00000020224	Si:ch211-103a14.5.	Clusterin; Belongs to the clusterin family.	0.586
ENSHCOP00000019657	LOC109522019	ENSHCOP00000019657	ENSHCOP00000016143	Si:ch211-103a14.5.	Guanylate kinase 1b.	0.648
ENSHCOP00000019657	LOC109526991	ENSHCOP00000019657	ENSHCOP00000003714	Si:ch211-103a14.5.	Calcium binding protein 5b.	0.485
ENSHCOP00000020224	ENSHCOP00000019657	ENSHCOP00000020224	ENSHCOP00000019657	Clusterin; Belongs to the clusterin family.	Si:ch211-103a14.5.	0.586
ENSHCOP00000020224	LOC109521628	ENSHCOP00000020224	ENSHCOP00000020701	Clusterin; Belongs to the clusterin family.	Opsin 1 (cone pigments), short-wave-sensitive 2.	0.640
ENSHCOP00000020224	rbp3	ENSHCOP00000020224	ENSHCOP00000007549	Clusterin; Belongs to the clusterin family.	Retinol binding protein 3.	0.913
LOC109521628	ENSHCOP00000020224	ENSHCOP00000020701	ENSHCOP00000020224	Opsin 1 (cone pigments), short-wave-sensitive 2.	Clusterin; Belongs to the clusterin family.	0.640
LOC109521628	rbp3	ENSHCOP00000020701	ENSHCOP00000007549	Opsin 1 (cone pigments), short-wave-sensitive 2.	Retinol binding protein 3.	0.408
LOC109522019	ENSHCOP00000019657	ENSHCOP00000016143	ENSHCOP00000019657	Guanylate kinase 1b.	Si:ch211-103a14.5.	0.648
LOC109522019	LOC109523218	ENSHCOP00000016143	ENSHCOP00000005401	Guanylate kinase 1b.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.527
LOC109522019	LOC109526991	ENSHCOP00000016143	ENSHCOP00000003714	Guanylate kinase 1b.	Calcium binding protein 5b.	0.544
LOC109522019	ina	ENSHCOP00000016143	ENSHCOP00000012878	Guanylate kinase 1b.	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.	0.436
LOC109522426	LOC109523218	ENSHCOP00000018870	ENSHCOP00000005401	Ankyrin repeat domain 33Ab.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.528
LOC109522426	ina	ENSHCOP00000018870	ENSHCOP00000012878	Ankyrin repeat domain 33Ab.	Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.	0.443
LOC109523218	LOC109522019	ENSHCOP00000005401	ENSHCOP00000016143	IF rod domain-containing protein; Belongs to the intermediate filament family.	Guanylate kinase 1b.	0.527
LOC109523218	LOC109522426	ENSHCOP00000005401	ENSHCOP00000018870	IF rod domain-containing protein; Belongs to the intermediate filament family.	Ankyrin repeat domain 33Ab.	0.528
LOC109523218	cplx4	ENSHCOP00000005401	ENSHCOP00000008970	IF rod domain-containing protein; Belongs to the intermediate filament family.	Complexin 4a.	0.624
LOC109523218	pdc	ENSHCOP00000005401	ENSHCOP00000020543	IF rod domain-containing protein; Belongs to the intermediate filament family.	Phosducin b.	0.869
LOC109526991	ENSHCOP00000019657	ENSHCOP00000003714	ENSHCOP00000019657	Calcium binding protein 5b.	Si:ch211-103a14.5.	0.485
LOC109526991	LOC109522019	ENSHCOP00000003714	ENSHCOP00000016143	Calcium binding protein 5b.	Guanylate kinase 1b.	0.544