STRINGSTRING
sf3a2 sf3a2 prpf4 prpf4 snrpc snrpc sf3b4 sf3b4 snrnp40 snrnp40 ENSHCOP00000005080 ENSHCOP00000005080 spaca6 spaca6 SART1 SART1 snrpa snrpa LOC109532036 LOC109532036 LOC109509128 LOC109509128 snrpb2 snrpb2 prpf3 prpf3 snrpd3 snrpd3 snrpg snrpg sf3a1 sf3a1 sf3b2 sf3b2 LOC109514733 LOC109514733 ncbp2 ncbp2 Snrnp200 Snrnp200 ENSHCOP00000014247 ENSHCOP00000014247 ENSHCOP00000015111 ENSHCOP00000015111 snrpe snrpe sf3b6 sf3b6 ddx42 ddx42 txnl4a txnl4a phf5a phf5a snrnp70 snrnp70 LOC109508638 LOC109508638 ENSHCOP00000022844 ENSHCOP00000022844 snrpd2 snrpd2 sf1 sf1 prpf6 prpf6 sf3b3 sf3b3 snrpb snrpb sf3a3 sf3a3 prpf8 prpf8 sf3b1 sf3b1 LOC109509962 LOC109509962 eftud2 eftud2 ddx23 ddx23 prpf31 prpf31
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3a2Splicing factor 3a, subunit 2. (290 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (485 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
sf3b4Splicing factor 3b, subunit 4. (399 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (348 aa)
ENSHCOP00000005080Small nuclear ribonucleoprotein polypeptide A. (321 aa)
spaca6Ig-like domain-containing protein. (313 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (781 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (273 aa)
LOC109532036HIV-1 Tat specific factor 1. (429 aa)
LOC109509128Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (271 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (699 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
sf3a1Splicing factor 3a, subunit 1. (781 aa)
sf3b2Splicing factor 3b, subunit 2. (846 aa)
LOC109514733Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (229 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (159 aa)
Snrnp200Helicase_PWI domain-containing protein. (558 aa)
ENSHCOP00000014247SEC63 domain-containing protein. (466 aa)
ENSHCOP00000015111Small nuclear ribonucleoprotein polypeptide F. (128 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (835 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
phf5aPHD finger protein 5A. (137 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (454 aa)
LOC109508638Sm domain-containing protein. (65 aa)
ENSHCOP00000022844DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (488 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
sf1Splicing factor 1. (669 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
prpf8Pre-mRNA processing factor 8. (2339 aa)
sf3b1Splicing factor 3b, subunit 1. (1322 aa)
LOC109509962Splicing factor 3B subunit 5. (86 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (972 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (803 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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