(16 nodes) Peptidase C1A, and A1 Propeptide network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109517147	Cathepsin L.1; Belongs to the peptidase C1 family. (378 aa)
	ENSHCOP00000001136	Cathepsin L.1; Belongs to the peptidase C1 family. (148 aa)
	LOC109517148	Uncharacterized protein; Belongs to the peptidase C1 family. (335 aa)
	LOC109529848	Uncharacterized protein. (127 aa)
	LOC109520249	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (397 aa)
	ctso	Cathepsin O; Belongs to the peptidase C1 family. (337 aa)
	LOC109528441	Renin; Belongs to the peptidase A1 family. (396 aa)
	LOC109526244	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (314 aa)
	LOC109524165	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (279 aa)
	LOC109512208	Cathepsin K; Belongs to the peptidase C1 family. (345 aa)
	ctsc	Cathepsin C; Belongs to the peptidase C1 family. (459 aa)
	ctsb	Cathepsin Ba; Belongs to the peptidase C1 family. (330 aa)
	ctsd	Cathepsin D; Belongs to the peptidase A1 family. (429 aa)
	ctsl	Si:dkey-26g8.5; Belongs to the peptidase C1 family. (340 aa)
	lgmn	Legumain. (435 aa)
	ENSHCOP00000026803	Granulin b. (551 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000001136	ENSHCOP00000026803	ENSHCOP00000001136	ENSHCOP00000026803	Cathepsin L.1; Belongs to the peptidase C1 family.	Granulin b.	0.418
ENSHCOP00000001136	LOC109517147	ENSHCOP00000001136	ENSHCOP00000001108	Cathepsin L.1; Belongs to the peptidase C1 family.	Cathepsin L.1; Belongs to the peptidase C1 family.	0.900
ENSHCOP00000001136	LOC109520249	ENSHCOP00000001136	ENSHCOP00000005234	Cathepsin L.1; Belongs to the peptidase C1 family.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.489
ENSHCOP00000001136	LOC109524165	ENSHCOP00000001136	ENSHCOP00000009786	Cathepsin L.1; Belongs to the peptidase C1 family.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.514
ENSHCOP00000001136	LOC109526244	ENSHCOP00000001136	ENSHCOP00000008044	Cathepsin L.1; Belongs to the peptidase C1 family.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.405
ENSHCOP00000001136	LOC109528441	ENSHCOP00000001136	ENSHCOP00000007057	Cathepsin L.1; Belongs to the peptidase C1 family.	Renin; Belongs to the peptidase A1 family.	0.489
ENSHCOP00000001136	LOC109529848	ENSHCOP00000001136	ENSHCOP00000002084	Cathepsin L.1; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.489
ENSHCOP00000001136	ctsb	ENSHCOP00000001136	ENSHCOP00000015708	Cathepsin L.1; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.454
ENSHCOP00000001136	ctsc	ENSHCOP00000001136	ENSHCOP00000011922	Cathepsin L.1; Belongs to the peptidase C1 family.	Cathepsin C; Belongs to the peptidase C1 family.	0.416
ENSHCOP00000001136	ctsd	ENSHCOP00000001136	ENSHCOP00000020393	Cathepsin L.1; Belongs to the peptidase C1 family.	Cathepsin D; Belongs to the peptidase A1 family.	0.489
ENSHCOP00000001136	ctsl	ENSHCOP00000001136	ENSHCOP00000025188	Cathepsin L.1; Belongs to the peptidase C1 family.	Si:dkey-26g8.5; Belongs to the peptidase C1 family.	0.902
ENSHCOP00000001136	ctso	ENSHCOP00000001136	ENSHCOP00000006908	Cathepsin L.1; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.447
ENSHCOP00000001136	lgmn	ENSHCOP00000001136	ENSHCOP00000026798	Cathepsin L.1; Belongs to the peptidase C1 family.	Legumain.	0.488
ENSHCOP00000026803	ENSHCOP00000001136	ENSHCOP00000026803	ENSHCOP00000001136	Granulin b.	Cathepsin L.1; Belongs to the peptidase C1 family.	0.418
ENSHCOP00000026803	LOC109512208	ENSHCOP00000026803	ENSHCOP00000010548	Granulin b.	Cathepsin K; Belongs to the peptidase C1 family.	0.418
ENSHCOP00000026803	LOC109517147	ENSHCOP00000026803	ENSHCOP00000001108	Granulin b.	Cathepsin L.1; Belongs to the peptidase C1 family.	0.418
ENSHCOP00000026803	LOC109517148	ENSHCOP00000026803	ENSHCOP00000001148	Granulin b.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.418
ENSHCOP00000026803	LOC109524165	ENSHCOP00000026803	ENSHCOP00000009786	Granulin b.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.517
ENSHCOP00000026803	LOC109526244	ENSHCOP00000026803	ENSHCOP00000008044	Granulin b.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.517
ENSHCOP00000026803	ctsb	ENSHCOP00000026803	ENSHCOP00000015708	Granulin b.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.509