(14 nodes) Mixed, incl. LIM interaction domain, and Dorsal spinal cord interneuron anterior axon guidance network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109526001	LIM domain only 1. (175 aa)
	LOC109521629	GATA binding protein 1a. (416 aa)
	lmo3	LIM domain only 3. (145 aa)
	LOC109516855	T-cell acute lymphocytic leukemia 1. (387 aa)
	lmo2	LIM domain only 2 (rhombotin-like 1). (155 aa)
	LOC109511093	BHLH domain-containing protein. (391 aa)
	LOC109512683	LIM domain binding 1a. (441 aa)
	lhx2	LIM homeobox 2b. (396 aa)
	ENSHCOP00000018882	annotation not available (86 aa)
	lhx9	LIM homeobox 9. (399 aa)
	LOC109526252	LIM domain binding 2a. (367 aa)
	ENSHCOP00000025036	Zinc finger protein, FOG family member 1. (1061 aa)
	ldb1	LIM-domain binding 1b. (417 aa)
	LOC109522629	GATA binding protein 2a. (477 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000018882	ENSHCOP00000025036	ENSHCOP00000018882	ENSHCOP00000025036	annotation not available	Zinc finger protein, FOG family member 1.	0.896
ENSHCOP00000018882	LOC109511093	ENSHCOP00000018882	ENSHCOP00000013752	annotation not available	BHLH domain-containing protein.	0.479
ENSHCOP00000018882	LOC109512683	ENSHCOP00000018882	ENSHCOP00000015513	annotation not available	LIM domain binding 1a.	0.584
ENSHCOP00000018882	LOC109516855	ENSHCOP00000018882	ENSHCOP00000007539	annotation not available	T-cell acute lymphocytic leukemia 1.	0.847
ENSHCOP00000018882	LOC109522629	ENSHCOP00000018882	ENSHCOP00000025874	annotation not available	GATA binding protein 2a.	0.423
ENSHCOP00000018882	LOC109526001	ENSHCOP00000018882	ENSHCOP00000001158	annotation not available	LIM domain only 1.	0.529
ENSHCOP00000018882	LOC109526252	ENSHCOP00000018882	ENSHCOP00000022115	annotation not available	LIM domain binding 2a.	0.565
ENSHCOP00000018882	ldb1	ENSHCOP00000018882	ENSHCOP00000025314	annotation not available	LIM-domain binding 1b.	0.584
ENSHCOP00000018882	lmo2	ENSHCOP00000018882	ENSHCOP00000013680	annotation not available	LIM domain only 2 (rhombotin-like 1).	0.949
ENSHCOP00000018882	lmo3	ENSHCOP00000018882	ENSHCOP00000007323	annotation not available	LIM domain only 3.	0.529
ENSHCOP00000025036	ENSHCOP00000018882	ENSHCOP00000025036	ENSHCOP00000018882	Zinc finger protein, FOG family member 1.	annotation not available	0.896
ENSHCOP00000025036	LOC109516855	ENSHCOP00000025036	ENSHCOP00000007539	Zinc finger protein, FOG family member 1.	T-cell acute lymphocytic leukemia 1.	0.603
ENSHCOP00000025036	LOC109521629	ENSHCOP00000025036	ENSHCOP00000002614	Zinc finger protein, FOG family member 1.	GATA binding protein 1a.	0.896
ENSHCOP00000025036	LOC109522629	ENSHCOP00000025036	ENSHCOP00000025874	Zinc finger protein, FOG family member 1.	GATA binding protein 2a.	0.638
ENSHCOP00000025036	lmo2	ENSHCOP00000025036	ENSHCOP00000013680	Zinc finger protein, FOG family member 1.	LIM domain only 2 (rhombotin-like 1).	0.672
LOC109511093	ENSHCOP00000018882	ENSHCOP00000013752	ENSHCOP00000018882	BHLH domain-containing protein.	annotation not available	0.479
LOC109511093	LOC109512683	ENSHCOP00000013752	ENSHCOP00000015513	BHLH domain-containing protein.	LIM domain binding 1a.	0.595
LOC109511093	LOC109516855	ENSHCOP00000013752	ENSHCOP00000007539	BHLH domain-containing protein.	T-cell acute lymphocytic leukemia 1.	0.444
LOC109511093	LOC109521629	ENSHCOP00000013752	ENSHCOP00000002614	BHLH domain-containing protein.	GATA binding protein 1a.	0.479
LOC109511093	LOC109522629	ENSHCOP00000013752	ENSHCOP00000025874	BHLH domain-containing protein.	GATA binding protein 2a.	0.423