(36 nodes) Structural constituent of nuclear pore, and Nuclear RNA export factor complex network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109507665	Nuclear receptor coactivator 5. (744 aa)
	ENSHCOP00000000657	Uncharacterized protein. (101 aa)
	ENSHCOP00000002450	BIG2 domain-containing protein. (631 aa)
	Nup205	Nucleoporin 205. (677 aa)
	nup50	Nucleoporin 50. (370 aa)
	ENSHCOP00000005074	Uncharacterized protein. (281 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2348 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (663 aa)
	ENSHCOP00000006981	Peptidase S59 domain-containing protein. (292 aa)
	Nup98	Uncharacterized protein. (357 aa)
	nup160	Nucleoporin 160. (1400 aa)
	nup43	Nucleoporin 43. (372 aa)
	nup62	Nsp1_C domain-containing protein. (534 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	LOC109515476	Translocated promoter region a, nuclear basket protein. (2131 aa)
	nup88	Nucleoporin 88. (720 aa)
	nup155	Nucleoporin 155. (1250 aa)
	ENSHCOP00000015345	Uncharacterized protein. (78 aa)
	nup153	Nucleoporin 153. (1441 aa)
	nup188	Nucleoporin 188. (1523 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	ENSHCOP00000018600	Uncharacterized protein. (89 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (287 aa)
	nxt2	Nuclear transport factor 2-like export factor 2. (143 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (907 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup210	Nucleoporin 210. (1847 aa)
	ENSHCOP00000021676	Uncharacterized protein. (108 aa)
	ENSHCOP00000021751	Uncharacterized protein. (409 aa)
	nup58	Nucleoporin 58. (537 aa)
	ahctf1	AT hook containing transcription factor 1. (1658 aa)
	nup37	Nucleoporin 37. (333 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	nup214	Nup214_FG domain-containing protein. (1944 aa)
	NUP54	Nucleoporin 54. (568 aa)
	nxf1	Zgc:153681. (511 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000000657	ENSHCOP00000002450	ENSHCOP00000000657	ENSHCOP00000002450	Uncharacterized protein.	BIG2 domain-containing protein.	0.794
ENSHCOP00000000657	ENSHCOP00000005074	ENSHCOP00000000657	ENSHCOP00000005074	Uncharacterized protein.	Uncharacterized protein.	0.951
ENSHCOP00000000657	ENSHCOP00000006981	ENSHCOP00000000657	ENSHCOP00000006981	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.776
ENSHCOP00000000657	ENSHCOP00000015345	ENSHCOP00000000657	ENSHCOP00000015345	Uncharacterized protein.	Uncharacterized protein.	0.911
ENSHCOP00000000657	ENSHCOP00000018600	ENSHCOP00000000657	ENSHCOP00000018600	Uncharacterized protein.	Uncharacterized protein.	0.640
ENSHCOP00000000657	ENSHCOP00000021676	ENSHCOP00000000657	ENSHCOP00000021676	Uncharacterized protein.	Uncharacterized protein.	0.868
ENSHCOP00000000657	ENSHCOP00000021751	ENSHCOP00000000657	ENSHCOP00000021751	Uncharacterized protein.	Uncharacterized protein.	0.776
ENSHCOP00000000657	LOC109507665	ENSHCOP00000000657	ENSHCOP00000000410	Uncharacterized protein.	Nuclear receptor coactivator 5.	0.698
ENSHCOP00000000657	LOC109515476	ENSHCOP00000000657	ENSHCOP00000012752	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.616
ENSHCOP00000000657	NUP54	ENSHCOP00000000657	ENSHCOP00000027937	Uncharacterized protein.	Nucleoporin 54.	0.951
ENSHCOP00000000657	Nup205	ENSHCOP00000000657	ENSHCOP00000005053	Uncharacterized protein.	Nucleoporin 205.	0.968
ENSHCOP00000000657	Nup98	ENSHCOP00000000657	ENSHCOP00000006994	Uncharacterized protein.	Uncharacterized protein.	0.776
ENSHCOP00000000657	aaas	ENSHCOP00000000657	ENSHCOP00000027752	Uncharacterized protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.930
ENSHCOP00000000657	ahctf1	ENSHCOP00000000657	ENSHCOP00000026889	Uncharacterized protein.	AT hook containing transcription factor 1.	0.874
ENSHCOP00000000657	ndc1	ENSHCOP00000000657	ENSHCOP00000017913	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.933
ENSHCOP00000000657	nup107	ENSHCOP00000000657	ENSHCOP00000019029	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.921
ENSHCOP00000000657	nup153	ENSHCOP00000000657	ENSHCOP00000015707	Uncharacterized protein.	Nucleoporin 153.	0.812
ENSHCOP00000000657	nup155	ENSHCOP00000000657	ENSHCOP00000015310	Uncharacterized protein.	Nucleoporin 155.	0.973
ENSHCOP00000000657	nup160	ENSHCOP00000000657	ENSHCOP00000007239	Uncharacterized protein.	Nucleoporin 160.	0.913
ENSHCOP00000000657	nup188	ENSHCOP00000000657	ENSHCOP00000017579	Uncharacterized protein.	Nucleoporin 188.	0.919