(45 nodes) Mixed, incl. Dystrophin-associated glycoprotein complex, and Protein O-linked mannosylation network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	drp2	Dystrophin related protein 2. (940 aa)
	SNTA1	Syntrophin alpha 1. (489 aa)
	ENSHCOP00000000818	Si:dkey-34e4.1. (290 aa)
	tor3a	Torsin family 3, member A. (355 aa)
	agrn	Agrin. (2075 aa)
	fktn	Fukutin. (458 aa)
	ENSHCOP00000004698	Syntrophin, gamma 2. (420 aa)
	crppa	CDP-L-ribitol pyrophosphorylase A. (436 aa)
	fkrp	Fukutin related protein. (532 aa)
	sntb2	Syntrophin, beta 2. (582 aa)
	LOC109525551	Torsin. (339 aa)
	tnfaip8l1	Tumor necrosis factor, alpha-induced protein 8-like 1. (197 aa)
	LOC109528318	Dystrobrevin. (619 aa)
	LOC109515023	Peptidase S72 domain-containing protein. (880 aa)
	sspn	Sarcospan (Kras oncogene-associated gene). (220 aa)
	sgcg	Sarcoglycan, gamma. (290 aa)
	FAM3A	Family with sequence similarity 3 member A. (230 aa)
	b4gat1	Beta-1,4-glucuronyltransferase 1. (432 aa)
	LOC109528145	Dystrobrevin. (560 aa)
	DAG1	Dystroglycan 1. (850 aa)
	pomt2	Protein-O-mannosyltransferase 2. (730 aa)
	sgcb	Sarcoglycan, beta (dystrophin-associated glycoprotein). (313 aa)
	ENSHCOP00000015429	Uncharacterized protein. (263 aa)
	LOC109532061	Olfactomedin-like 2Ba. (665 aa)
	sgcd	Sarcoglycan, delta (dystrophin-associated glycoprotein). (326 aa)
	pomt1	Protein-O-mannosyltransferase 1. (701 aa)
	SGCZ	Sarcoglycan zeta. (310 aa)
	ENSHCOP00000016531	Uncharacterized protein. (521 aa)
	ENSHCOP00000016627	Uncharacterized protein. (932 aa)
	atp11c	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1102 aa)
	ENSHCOP00000019268	Nitric oxide synthase 1 (neuronal) adaptor protein b. (437 aa)
	rxylt1	Ribitol xylosyltransferase 1. (433 aa)
	hspg2	Heparan sulfate proteoglycan 2. (3345 aa)
	LOC109524821	PID domain-containing protein. (727 aa)
	LOC109513628	LARGE xylosyl- and glucuronyltransferase 1. (759 aa)
	ENSHCOP00000022295	ILEI domain-containing protein. (179 aa)
	b3galnt2	Hexosyltransferase. (456 aa)
	sntb1	Syntrophin, basic 1. (531 aa)
	ENSHCOP00000023855	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane. (3424 aa)
	pomgnt2	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-). (617 aa)
	pomk	Protein O-mannose kinase. (346 aa)
	LOC109531453	Family with sequence similarity 3 member D. (224 aa)
	LOC109513277	Sarcoglycan, alpha. (394 aa)
	LOC109532064	Uncharacterized protein. (459 aa)
	ENSHCOP00000028007	Uncharacterized protein. (1352 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAG1	ENSHCOP00000016531	ENSHCOP00000011457	ENSHCOP00000016531	Dystroglycan 1.	Uncharacterized protein.	0.572
DAG1	ENSHCOP00000016627	ENSHCOP00000011457	ENSHCOP00000016627	Dystroglycan 1.	Uncharacterized protein.	0.572
DAG1	ENSHCOP00000022295	ENSHCOP00000011457	ENSHCOP00000022295	Dystroglycan 1.	ILEI domain-containing protein.	0.803
DAG1	ENSHCOP00000023855	ENSHCOP00000011457	ENSHCOP00000023855	Dystroglycan 1.	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.572
DAG1	ENSHCOP00000028007	ENSHCOP00000011457	ENSHCOP00000028007	Dystroglycan 1.	Uncharacterized protein.	0.572
DAG1	FAM3A	ENSHCOP00000011457	ENSHCOP00000009296	Dystroglycan 1.	Family with sequence similarity 3 member A.	0.534
DAG1	LOC109513277	ENSHCOP00000011457	ENSHCOP00000027135	Dystroglycan 1.	Sarcoglycan, alpha.	0.621
DAG1	LOC109515023	ENSHCOP00000011457	ENSHCOP00000008580	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.902
DAG1	LOC109531453	ENSHCOP00000011457	ENSHCOP00000026871	Dystroglycan 1.	Family with sequence similarity 3 member D.	0.534
DAG1	SGCZ	ENSHCOP00000011457	ENSHCOP00000016333	Dystroglycan 1.	Sarcoglycan zeta.	0.612
DAG1	agrn	ENSHCOP00000011457	ENSHCOP00000002641	Dystroglycan 1.	Agrin.	0.982
DAG1	b3galnt2	ENSHCOP00000011457	ENSHCOP00000022365	Dystroglycan 1.	Hexosyltransferase.	0.715
DAG1	b4gat1	ENSHCOP00000011457	ENSHCOP00000009648	Dystroglycan 1.	Beta-1,4-glucuronyltransferase 1.	0.407
DAG1	drp2	ENSHCOP00000011457	ENSHCOP00000000178	Dystroglycan 1.	Dystrophin related protein 2.	0.572
DAG1	fkrp	ENSHCOP00000011457	ENSHCOP00000005094	Dystroglycan 1.	Fukutin related protein.	0.544
DAG1	fktn	ENSHCOP00000011457	ENSHCOP00000003137	Dystroglycan 1.	Fukutin.	0.548
DAG1	hspg2	ENSHCOP00000011457	ENSHCOP00000021217	Dystroglycan 1.	Heparan sulfate proteoglycan 2.	0.816
DAG1	pomgnt2	ENSHCOP00000011457	ENSHCOP00000024301	Dystroglycan 1.	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-).	0.910
DAG1	pomk	ENSHCOP00000011457	ENSHCOP00000024968	Dystroglycan 1.	Protein O-mannose kinase.	0.695
DAG1	pomt1	ENSHCOP00000011457	ENSHCOP00000016195	Dystroglycan 1.	Protein-O-mannosyltransferase 1.	0.818