15 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000006213	UBIQUITIN_CONJUGAT_2 domain-containing protein. (149 aa)
	birc6	Baculoviral IAP repeat containing 6. (3805 aa)
	ENSHCOP00000007719	Ubiquitin-like domain-containing protein. (106 aa)
	ubb	Ubiquitin B. (281 aa)
	ube2v1	Ubiquitin-conjugating enzyme E2 variant 1. (147 aa)
	ubc	Uncharacterized protein. (989 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	traf7	TNF receptor-associated factor 7. (654 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (339 aa)
	uba1	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family. (1052 aa)
	uba6	Ubiquitin like modifier activating enzyme 6. (986 aa)
	zfand4	Zinc finger, AN1-type domain 4. (681 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ubqln4	Ubiquilin 4. (594 aa)
	ube2k	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000006213	ENSHCOP00000007719	ENSHCOP00000006213	ENSHCOP00000007719	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.989
ENSHCOP00000006213	birc6	ENSHCOP00000006213	ENSHCOP00000006215	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Baculoviral IAP repeat containing 6.	0.966
ENSHCOP00000006213	rps27a	ENSHCOP00000006213	ENSHCOP00000016034	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal protein S27a.	0.974
ENSHCOP00000006213	traf7	ENSHCOP00000006213	ENSHCOP00000016247	UBIQUITIN_CONJUGAT_2 domain-containing protein.	TNF receptor-associated factor 7.	0.960
ENSHCOP00000006213	uba1	ENSHCOP00000006213	ENSHCOP00000018033	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.849
ENSHCOP00000006213	uba52	ENSHCOP00000006213	ENSHCOP00000021282	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.989
ENSHCOP00000006213	uba6	ENSHCOP00000006213	ENSHCOP00000018272	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.849
ENSHCOP00000006213	ubb	ENSHCOP00000006213	ENSHCOP00000007731	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin B.	0.872
ENSHCOP00000006213	ubc	ENSHCOP00000006213	ENSHCOP00000009639	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.872
ENSHCOP00000006213	ube2k	ENSHCOP00000006213	ENSHCOP00000024998	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.620
ENSHCOP00000006213	ube2v1	ENSHCOP00000006213	ENSHCOP00000008019	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.993
ENSHCOP00000006213	ubl7	ENSHCOP00000006213	ENSHCOP00000016863	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.800
ENSHCOP00000006213	ubqln4	ENSHCOP00000006213	ENSHCOP00000024074	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquilin 4.	0.800
ENSHCOP00000006213	zfand4	ENSHCOP00000006213	ENSHCOP00000019129	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Zinc finger, AN1-type domain 4.	0.955
ENSHCOP00000007719	ENSHCOP00000006213	ENSHCOP00000007719	ENSHCOP00000006213	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.989
ENSHCOP00000007719	birc6	ENSHCOP00000007719	ENSHCOP00000006215	Ubiquitin-like domain-containing protein.	Baculoviral IAP repeat containing 6.	0.989
ENSHCOP00000007719	rps27a	ENSHCOP00000007719	ENSHCOP00000016034	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.994
ENSHCOP00000007719	traf7	ENSHCOP00000007719	ENSHCOP00000016247	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor 7.	0.955
ENSHCOP00000007719	uba1	ENSHCOP00000007719	ENSHCOP00000018033	Ubiquitin-like domain-containing protein.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.910
ENSHCOP00000007719	uba6	ENSHCOP00000007719	ENSHCOP00000018272	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.910