(27 nodes) Proteasome network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psma3	Proteasome subunit alpha type. (255 aa)
	psmb2	Proteasome subunit beta. (202 aa)
	psmb6	Proteasome subunit beta. (233 aa)
	psma5	Proteasome subunit alpha type. (233 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (417 aa)
	psmc6	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	psmc3	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (427 aa)
	psmd2	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family. (905 aa)
	psmb5	Proteasome subunit beta. (272 aa)
	psma1	Proteasome subunit alpha type. (264 aa)
	psmc5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (406 aa)
	psmd12	Proteasome 26S subunit, non-ATPase 12. (456 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (440 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	psmd3	Proteasome 26S subunit, non-ATPase 3. (520 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	psmd13	Proteasome 26S subunit, non-ATPase 13. (378 aa)
	psmc2	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
	psmd6	Proteasome 26S subunit, non-ATPase 6. (389 aa)
	psmd7	Proteasome 26S subunit, non-ATPase 7. (326 aa)
	psmd8	Proteasome 26S subunit, non-ATPase 8. (265 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (259 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	psma8	Proteasome subunit alpha type. (251 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psma1	psma2	ENSHCOP00000013921	ENSHCOP00000007766	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma3	ENSHCOP00000013921	ENSHCOP00000000069	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma4	ENSHCOP00000013921	ENSHCOP00000027003	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma5	ENSHCOP00000013921	ENSHCOP00000007221	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma6	ENSHCOP00000013921	ENSHCOP00000016047	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma8	ENSHCOP00000013921	ENSHCOP00000028393	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psmb1	ENSHCOP00000013921	ENSHCOP00000010984	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb2	ENSHCOP00000013921	ENSHCOP00000002607	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb3	ENSHCOP00000013921	ENSHCOP00000018113	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb4	ENSHCOP00000013921	ENSHCOP00000027244	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma1	psmb5	ENSHCOP00000013921	ENSHCOP00000013676	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb6	ENSHCOP00000013921	ENSHCOP00000006461	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmc1	ENSHCOP00000013921	ENSHCOP00000015971	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.999
psma1	psmc2	ENSHCOP00000013921	ENSHCOP00000023639	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.999
psma1	psmc3	ENSHCOP00000013921	ENSHCOP00000011629	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.	0.999
psma1	psmc4	ENSHCOP00000013921	ENSHCOP00000009820	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.998
psma1	psmc5	ENSHCOP00000013921	ENSHCOP00000014246	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.997
psma1	psmc6	ENSHCOP00000013921	ENSHCOP00000010200	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.	0.999
psma1	psmd12	ENSHCOP00000013921	ENSHCOP00000015949	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 12.	0.999
psma1	psmd13	ENSHCOP00000013921	ENSHCOP00000020329	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 13.	0.998