(31 nodes) Ubiquitin specific protease, conserved site, and OTU domain network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	znf598	Zinc finger protein 598. (926 aa)
	usp4	Ubiquitin carboxyl-terminal hydrolase. (998 aa)
	usp48	Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (956 aa)
	usp25	Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family. (1168 aa)
	otud1	OTU deubiquitinase 1. (372 aa)
	rnf123	Ring finger protein 123. (1227 aa)
	usp36	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family. (1110 aa)
	usp5	Ubiquitin carboxyl-terminal hydrolase. (828 aa)
	USP15	Ubiquitin carboxyl-terminal hydrolase. (921 aa)
	ercc8	Excision repair cross-complementation group 8. (384 aa)
	ENSHCOP00000014489	Ubiquitin carboxyl-terminal hydrolase. (487 aa)
	LOC109518535	HID1 domain containing b. (799 aa)
	LOC109517939	Transmembrane phosphatase with tensin homology. (511 aa)
	usp13	Ubiquitinyl hydrolase 1. (864 aa)
	ENSHCOP00000015413	Ataxin 3. (217 aa)
	otud6b	OTU domain containing 6B. (297 aa)
	ubac1	UBA domain containing 1. (440 aa)
	josd2	Josephin domain containing 2. (191 aa)
	zup1	Zinc finger containing ubiquitin peptidase 1. (591 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1111 aa)
	otud5	OTU deubiquitinase 5a. (506 aa)
	ENSHCOP00000018695	UV-stimulated scaffold protein A. (756 aa)
	usp19	Ubiquitin specific peptidase 19. (1257 aa)
	LOC109515671	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family. (1214 aa)
	LOC109510367	Ubiquitin carboxyl-terminal hydrolase. (987 aa)
	ENSHCOP00000024541	USP domain-containing protein; Belongs to the peptidase C19 family. (96 aa)
	Usp42	USP domain-containing protein; Belongs to the peptidase C19 family. (219 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (798 aa)
	otud4	OTU domain-containing protein. (892 aa)
	ercc6	Excision repair cross-complementation group 6. (1377 aa)
	Usp40	USP domain-containing protein; Belongs to the peptidase C19 family. (109 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000014489	rnf123	ENSHCOP00000014489	ENSHCOP00000011502	Ubiquitin carboxyl-terminal hydrolase.	Ring finger protein 123.	0.541
ENSHCOP00000015413	josd2	ENSHCOP00000015413	ENSHCOP00000016813	Ataxin 3.	Josephin domain containing 2.	0.700
ENSHCOP00000015413	otud6b	ENSHCOP00000015413	ENSHCOP00000015497	Ataxin 3.	OTU domain containing 6B.	0.407
ENSHCOP00000015413	usp13	ENSHCOP00000015413	ENSHCOP00000015401	Ataxin 3.	Ubiquitinyl hydrolase 1.	0.426
ENSHCOP00000015413	usp5	ENSHCOP00000015413	ENSHCOP00000013878	Ataxin 3.	Ubiquitin carboxyl-terminal hydrolase.	0.426
ENSHCOP00000015413	usp7	ENSHCOP00000015413	ENSHCOP00000018154	Ataxin 3.	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.	0.483
ENSHCOP00000018695	LOC109515671	ENSHCOP00000018695	ENSHCOP00000022468	UV-stimulated scaffold protein A.	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	0.645
ENSHCOP00000018695	Usp40	ENSHCOP00000018695	ENSHCOP00000028163	UV-stimulated scaffold protein A.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.845
ENSHCOP00000018695	ercc6	ENSHCOP00000018695	ENSHCOP00000027896	UV-stimulated scaffold protein A.	Excision repair cross-complementation group 6.	0.907
ENSHCOP00000018695	ercc8	ENSHCOP00000018695	ENSHCOP00000014470	UV-stimulated scaffold protein A.	Excision repair cross-complementation group 8.	0.957
ENSHCOP00000018695	usp25	ENSHCOP00000018695	ENSHCOP00000006855	UV-stimulated scaffold protein A.	Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family.	0.645
ENSHCOP00000018695	usp48	ENSHCOP00000018695	ENSHCOP00000003502	UV-stimulated scaffold protein A.	Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family.	0.645
ENSHCOP00000018695	usp7	ENSHCOP00000018695	ENSHCOP00000018154	UV-stimulated scaffold protein A.	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.	0.976
LOC109510367	rnf123	ENSHCOP00000023257	ENSHCOP00000011502	Ubiquitin carboxyl-terminal hydrolase.	Ring finger protein 123.	0.773
LOC109510367	usp7	ENSHCOP00000023257	ENSHCOP00000018154	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.	0.659
LOC109515671	ENSHCOP00000018695	ENSHCOP00000022468	ENSHCOP00000018695	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	UV-stimulated scaffold protein A.	0.645
LOC109515671	LOC109517939	ENSHCOP00000022468	ENSHCOP00000015015	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	Transmembrane phosphatase with tensin homology.	0.409
LOC109515671	LOC109518535	ENSHCOP00000022468	ENSHCOP00000014872	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	HID1 domain containing b.	0.413
LOC109515671	Usp40	ENSHCOP00000022468	ENSHCOP00000028163	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.620
LOC109515671	otud6b	ENSHCOP00000022468	ENSHCOP00000015497	Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.	OTU domain containing 6B.	0.551