(5 nodes) Mixed, incl. Zinc finger, SIAH-type, and Peptidase C65, otubain network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	usp8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1072 aa)
	LOC109525917	RING-type domain-containing protein. (359 aa)
	otub1	Ubiquitin thioesterase. (266 aa)
	rnf41	Ring finger protein 41. (318 aa)
	LOC109515659	Ubiquitin carboxyl-terminal hydrolase. (417 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109515659	LOC109525917	ENSHCOP00000022346	ENSHCOP00000000768	Ubiquitin carboxyl-terminal hydrolase.	RING-type domain-containing protein.	0.547
LOC109515659	otub1	ENSHCOP00000022346	ENSHCOP00000002241	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin thioesterase.	0.511
LOC109515659	rnf41	ENSHCOP00000022346	ENSHCOP00000006930	Ubiquitin carboxyl-terminal hydrolase.	Ring finger protein 41.	0.824
LOC109525917	LOC109515659	ENSHCOP00000000768	ENSHCOP00000022346	RING-type domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.547
LOC109525917	otub1	ENSHCOP00000000768	ENSHCOP00000002241	RING-type domain-containing protein.	Ubiquitin thioesterase.	0.768
LOC109525917	usp8	ENSHCOP00000000768	ENSHCOP00000000591	RING-type domain-containing protein.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.712
otub1	LOC109515659	ENSHCOP00000002241	ENSHCOP00000022346	Ubiquitin thioesterase.	Ubiquitin carboxyl-terminal hydrolase.	0.511
otub1	LOC109525917	ENSHCOP00000002241	ENSHCOP00000000768	Ubiquitin thioesterase.	RING-type domain-containing protein.	0.768
otub1	usp8	ENSHCOP00000002241	ENSHCOP00000000591	Ubiquitin thioesterase.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.790
rnf41	LOC109515659	ENSHCOP00000006930	ENSHCOP00000022346	Ring finger protein 41.	Ubiquitin carboxyl-terminal hydrolase.	0.824
rnf41	usp8	ENSHCOP00000006930	ENSHCOP00000000591	Ring finger protein 41.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.986
usp8	LOC109525917	ENSHCOP00000000591	ENSHCOP00000000768	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	RING-type domain-containing protein.	0.712
usp8	otub1	ENSHCOP00000000591	ENSHCOP00000002241	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	Ubiquitin thioesterase.	0.790
usp8	rnf41	ENSHCOP00000000591	ENSHCOP00000006930	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	Ring finger protein 41.	0.986