29 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pold4	Si:dkey-28b4.7. (106 aa)
	rev1	REV1 DNA directed polymerase. (809 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	dtl	Denticleless E3 ubiquitin protein ligase homolog (Drosophila). (616 aa)
	rev3l	REV3 like, DNA directed polymerase zeta catalytic subunit. (2836 aa)
	zbtb1	Zinc finger and BTB domain containing 1. (626 aa)
	pclaf	PCNA clamp associated factor. (121 aa)
	ENSHCOP00000008158	Spermatogenesis associated 22. (366 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (437 aa)
	sprtn	SprT-like N-terminal domain. (405 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (521 aa)
	Polk	Polymerase (DNA directed) kappa. (396 aa)
	poldip2	Polymerase (DNA-directed), delta interacting protein 2. (375 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	cdkn2d	Cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4). (162 aa)
	poli	Polymerase (DNA directed) iota. (621 aa)
	ENSHCOP00000017437	Uncharacterized protein. (557 aa)
	LOC109512331	UmuC domain-containing protein. (184 aa)
	hrob	Si:dkey-260c8.8. (669 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
	Pola1	DNA polymerase. (1356 aa)
	pold1	DNA polymerase. (1105 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
	polh	Polymerase (DNA directed), eta. (483 aa)
	primpol	Primase and polymerase (DNA-directed). (501 aa)
	wrnip1	WRN helicase interacting protein 1. (591 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109512331	Pola1	ENSHCOP00000018206	ENSHCOP00000023742	UmuC domain-containing protein.	DNA polymerase.	0.721
LOC109512331	Polk	ENSHCOP00000018206	ENSHCOP00000011993	UmuC domain-containing protein.	Polymerase (DNA directed) kappa.	0.737
LOC109512331	pcna	ENSHCOP00000018206	ENSHCOP00000003160	UmuC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.971
LOC109512331	pold1	ENSHCOP00000018206	ENSHCOP00000024706	UmuC domain-containing protein.	DNA polymerase.	0.849
LOC109512331	pold2	ENSHCOP00000018206	ENSHCOP00000025934	UmuC domain-containing protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.723
LOC109512331	pold3	ENSHCOP00000018206	ENSHCOP00000009331	UmuC domain-containing protein.	Polymerase (DNA-directed), delta 3, accessory subunit.	0.559
LOC109512331	pole	ENSHCOP00000018206	ENSHCOP00000021284	UmuC domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.819
LOC109512331	pole2	ENSHCOP00000018206	ENSHCOP00000010649	UmuC domain-containing protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.570
LOC109512331	polh	ENSHCOP00000018206	ENSHCOP00000026632	UmuC domain-containing protein.	Polymerase (DNA directed), eta.	0.922
LOC109512331	poli	ENSHCOP00000018206	ENSHCOP00000016621	UmuC domain-containing protein.	Polymerase (DNA directed) iota.	0.638
LOC109512331	rev1	ENSHCOP00000018206	ENSHCOP00000002495	UmuC domain-containing protein.	REV1 DNA directed polymerase.	0.980
LOC109512331	rev3l	ENSHCOP00000018206	ENSHCOP00000005351	UmuC domain-containing protein.	REV3 like, DNA directed polymerase zeta catalytic subunit.	0.942
LOC109512331	sprtn	ENSHCOP00000018206	ENSHCOP00000010216	UmuC domain-containing protein.	SprT-like N-terminal domain.	0.678
LOC109512331	vcp	ENSHCOP00000018206	ENSHCOP00000012599	UmuC domain-containing protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.526
LOC109512331	wrnip1	ENSHCOP00000018206	ENSHCOP00000027969	UmuC domain-containing protein.	WRN helicase interacting protein 1.	0.404
Pola1	LOC109512331	ENSHCOP00000023742	ENSHCOP00000018206	DNA polymerase.	UmuC domain-containing protein.	0.721
Pola1	Polk	ENSHCOP00000023742	ENSHCOP00000011993	DNA polymerase.	Polymerase (DNA directed) kappa.	0.719
Pola1	dtl	ENSHCOP00000023742	ENSHCOP00000004235	DNA polymerase.	Denticleless E3 ubiquitin protein ligase homolog (Drosophila).	0.705
Pola1	pcna	ENSHCOP00000023742	ENSHCOP00000003160	DNA polymerase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.987
Pola1	pold1	ENSHCOP00000023742	ENSHCOP00000024706	DNA polymerase.	DNA polymerase.	0.960