23 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109522629	GATA binding protein 2a. (477 aa)
	zbtb49	Zinc finger and BTB domain containing 49. (499 aa)
	LOC109522556	Citron rho-interacting serine/threonine kinase a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2121 aa)
	LOC109514211	Mothers against decapentaplegic homolog. (510 aa)
	LOC109532549	CREB binding protein b. (1735 aa)
	med25	Mediator complex subunit 25. (749 aa)
	LOC109524982	Citron rho-interacting serine/threonine kinase b. (1567 aa)
	ENSHCOP00000018882	annotation not available (86 aa)
	LOC109507274	Vestigial-like family member 4a. (265 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	vgll4	Vestigial-like family member 4b. (315 aa)
	LOC109514703	Mothers against decapentaplegic homolog. (503 aa)
	LOC109511670	Vestigial like 4 like. (282 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	ENSHCOP00000006772	Uncharacterized protein. (615 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (375 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	AR	Androgen receptor. (703 aa)
	ENSHCOP00000005461	Mothers against decapentaplegic homolog. (583 aa)
	GATA2	GATA binding protein 2. (434 aa)
	LOC109521629	GATA binding protein 1a. (416 aa)
	LOC109524475	Uncharacterized protein. (661 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	ENSHCOP00000006772	ENSHCOP00000005587	ENSHCOP00000006772	Androgen receptor.	Uncharacterized protein.	0.500
AR	LOC109512841	ENSHCOP00000005587	ENSHCOP00000007909	Androgen receptor.	E1A binding protein p300 a.	0.610
AR	LOC109514850	ENSHCOP00000005587	ENSHCOP00000024673	Androgen receptor.	E1A binding protein p300 b.	0.610
AR	LOC109524475	ENSHCOP00000005587	ENSHCOP00000002512	Androgen receptor.	Uncharacterized protein.	0.906
AR	LOC109527342	ENSHCOP00000005587	ENSHCOP00000017333	Androgen receptor.	CREB binding protein a.	0.500
AR	LOC109532526	ENSHCOP00000005587	ENSHCOP00000006363	Androgen receptor.	Uncharacterized protein.	0.500
AR	LOC109532549	ENSHCOP00000005587	ENSHCOP00000021630	Androgen receptor.	CREB binding protein b.	0.500
ENSHCOP00000005461	ENSHCOP00000006772	ENSHCOP00000005461	ENSHCOP00000006772	Mothers against decapentaplegic homolog.	Uncharacterized protein.	0.446
ENSHCOP00000005461	LOC109512841	ENSHCOP00000005461	ENSHCOP00000007909	Mothers against decapentaplegic homolog.	E1A binding protein p300 a.	0.611
ENSHCOP00000005461	LOC109514850	ENSHCOP00000005461	ENSHCOP00000024673	Mothers against decapentaplegic homolog.	E1A binding protein p300 b.	0.611
ENSHCOP00000005461	LOC109527342	ENSHCOP00000005461	ENSHCOP00000017333	Mothers against decapentaplegic homolog.	CREB binding protein a.	0.446
ENSHCOP00000005461	LOC109532526	ENSHCOP00000005461	ENSHCOP00000006363	Mothers against decapentaplegic homolog.	Uncharacterized protein.	0.446
ENSHCOP00000005461	LOC109532549	ENSHCOP00000005461	ENSHCOP00000021630	Mothers against decapentaplegic homolog.	CREB binding protein b.	0.446
ENSHCOP00000006772	AR	ENSHCOP00000006772	ENSHCOP00000005587	Uncharacterized protein.	Androgen receptor.	0.500
ENSHCOP00000006772	ENSHCOP00000005461	ENSHCOP00000006772	ENSHCOP00000005461	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.446
ENSHCOP00000006772	ENSHCOP00000018882	ENSHCOP00000006772	ENSHCOP00000018882	Uncharacterized protein.	annotation not available	0.480
ENSHCOP00000006772	GATA2	ENSHCOP00000006772	ENSHCOP00000002963	Uncharacterized protein.	GATA binding protein 2.	0.492
ENSHCOP00000006772	LOC109512841	ENSHCOP00000006772	ENSHCOP00000007909	Uncharacterized protein.	E1A binding protein p300 a.	0.854
ENSHCOP00000006772	LOC109514211	ENSHCOP00000006772	ENSHCOP00000022820	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.446
ENSHCOP00000006772	LOC109514703	ENSHCOP00000006772	ENSHCOP00000015228	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.446