80 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDH2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (920 aa)
	dcx	Uncharacterized protein. (351 aa)
	ENSHCOP00000001552	Uncharacterized protein. (133 aa)
	NAV1	Neuron navigator 1. (1145 aa)
	kiaa0319l	Si:ch211-193k19.1. (883 aa)
	GATA2	GATA binding protein 2. (434 aa)
	cntn2	Contactin 2. (1042 aa)
	supt5h	Transcription elongation factor SPT5. (1071 aa)
	bbs1	Bardet-Biedl syndrome 1. (581 aa)
	cdk5	Cyclin-dependent kinase 5. (258 aa)
	capzb	Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family. (2816 aa)
	ADGRL3	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family. (1401 aa)
	LOC109531771	Centrosomal protein 85, like. (769 aa)
	celsr3	Cadherin, EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family. (3079 aa)
	sh3rf1	SH3 domain containing ring finger 1. (858 aa)
	barhl2	BarH-like homeobox 2. (354 aa)
	pex7	Peroxisomal biogenesis factor 7. (327 aa)
	fat3	FAT atypical cadherin 3a. (4524 aa)
	LOC109524734	Cyclin-dependent kinase 5 activator. (335 aa)
	ENSHCOP00000007634	Uncharacterized protein. (614 aa)
	CRK	CRK proto-oncogene, adaptor protein. (316 aa)
	phox2b	Paired like homeobox 2Bb. (286 aa)
	ENSHCOP00000008686	Fork-head domain-containing protein. (317 aa)
	SRF	Serum response factor. (344 aa)
	ndnf	Neuron-derived neurotrophic factor. (532 aa)
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (174 aa)
	ASTN2	Astrotactin 2. (1256 aa)
	auts2	Activator of transcription and developmental regulator AUTS2 a. (1283 aa)
	LOC109516609	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1011 aa)
	ENSHCOP00000010653	Homeobox domain-containing protein. (155 aa)
	VANGL2	Vang-like protein. (527 aa)
	astn1	Astrotactin 1. (1261 aa)
	LOC109520129	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (2844 aa)
	LOC109523437	LIM homeobox 1a. (407 aa)
	LOC109511332	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family. (1493 aa)
	dnaaf4	Dynein axonemal assembly factor 4. (413 aa)
	scrib	Scribble planar cell polarity protein. (1649 aa)
	cdk5r1	Cyclin-dependent kinase 5, regulatory subunit 1b (p35). (299 aa)
	ENSHCOP00000013481	Reelin domain-containing protein. (267 aa)
	dab1	DAB adaptor protein 1a. (514 aa)
	mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1. (917 aa)
	bbs4	Bardet-Biedl syndrome 4. (554 aa)
	NEO1	Neogenin 1. (1180 aa)
	Neo1	Ig-like domain-containing protein. (108 aa)
	ENSHCOP00000015866	Fork-head domain-containing protein. (376 aa)
	cck	Cholecystokinin b. (127 aa)
	srf	Serum response factor b. (601 aa)
	CDH2-2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
	ENSHCOP00000017162	Forkhead box G1a. (364 aa)
	LOC109521262	Uncharacterized protein. (943 aa)
	LOC109508028	Neuron navigator 1b. (1523 aa)
	LOC109521690	Uncharacterized protein. (250 aa)
	LOC109520613	DAB adaptor protein 1b. (580 aa)
	gas6	Uncharacterized protein. (619 aa)
	alkbh1	AlkB homolog 1, histone H2A dioxygenase. (356 aa)
	pex13	Peroxisomal biogenesis factor 13. (401 aa)
	pcm1	Pericentriolar material 1. (2046 aa)
	LOC109513660	Doublecortin-like kinase 1b. (728 aa)
	LOC109524482	Glycoprotein M6Aa. (267 aa)
	dclk1	Doublecortin-like kinase 1a. (711 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1561 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (306 aa)
	LOC109529646	Gastrin domain-containing protein. (137 aa)
	cdkl5	Protein kinase domain-containing protein. (987 aa)
	LOC109513649	Cyclin-dependent kinase 5 activator. (331 aa)
	pomgnt2	Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-). (617 aa)
	barhl1	BarH-like homeobox 1a. (330 aa)
	MDGA2	MAM domain containing glycosylphosphatidylinositol anchor 2. (961 aa)
	adgra3	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family. (1296 aa)
	lrrc1	Leucine rich repeat containing 1. (525 aa)
	LOC109522629	GATA binding protein 2a. (477 aa)
	dcc	DCC netrin 1 receptor. (1445 aa)
	Reln	Uncharacterized protein. (877 aa)
	ENSHCOP00000026026	Uncharacterized protein. (863 aa)
	rest	Uncharacterized protein. (347 aa)
	ENSHCOP00000026533	C2H2-type domain-containing protein. (114 aa)
	bax	BCL2 associated X, apoptosis regulator a. (255 aa)
	tubgcp2	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (867 aa)
	LOC109523356	Neuropilin; Belongs to the neuropilin family. (883 aa)
	cdk5r2	Cyclin-dependent kinase 5, regulatory subunit 2b (p39). (281 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL3	adgra3	ENSHCOP00000004570	ENSHCOP00000024990	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.627
ADGRL3	lrrc1	ENSHCOP00000004570	ENSHCOP00000025478	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 1.	0.620
ADGRL3	scrib	ENSHCOP00000004570	ENSHCOP00000012533	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Scribble planar cell polarity protein.	0.620
ADGRL3	vegfa	ENSHCOP00000004570	ENSHCOP00000009916	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.908
CDH2	CDH2-2	ENSHCOP00000008678	ENSHCOP00000017126	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
CDH2-2	CDH2	ENSHCOP00000017126	ENSHCOP00000008678	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
CRK	LOC109520613	ENSHCOP00000007822	ENSHCOP00000017848	CRK proto-oncogene, adaptor protein.	DAB adaptor protein 1b.	0.418
CRK	crkl	ENSHCOP00000007822	ENSHCOP00000022046	CRK proto-oncogene, adaptor protein.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.911
CRK	dab1	ENSHCOP00000007822	ENSHCOP00000013868	CRK proto-oncogene, adaptor protein.	DAB adaptor protein 1a.	0.418
CRK	vegfa	ENSHCOP00000007822	ENSHCOP00000009916	CRK proto-oncogene, adaptor protein.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.452
ENSHCOP00000007634	bbs4	ENSHCOP00000007634	ENSHCOP00000014685	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.537
ENSHCOP00000007634	pcm1	ENSHCOP00000007634	ENSHCOP00000020835	Uncharacterized protein.	Pericentriolar material 1.	0.494
ENSHCOP00000008686	ENSHCOP00000015866	ENSHCOP00000008686	ENSHCOP00000015866	Fork-head domain-containing protein.	Fork-head domain-containing protein.	0.907
ENSHCOP00000008686	SRF	ENSHCOP00000008686	ENSHCOP00000008944	Fork-head domain-containing protein.	Serum response factor.	0.443
ENSHCOP00000008686	srf	ENSHCOP00000008686	ENSHCOP00000017074	Fork-head domain-containing protein.	Serum response factor b.	0.443
ENSHCOP00000013481	ENSHCOP00000026026	ENSHCOP00000013481	ENSHCOP00000026026	Reelin domain-containing protein.	Uncharacterized protein.	0.946
ENSHCOP00000013481	LOC109520613	ENSHCOP00000013481	ENSHCOP00000017848	Reelin domain-containing protein.	DAB adaptor protein 1b.	0.617
ENSHCOP00000013481	Reln	ENSHCOP00000013481	ENSHCOP00000026006	Reelin domain-containing protein.	Uncharacterized protein.	0.938
ENSHCOP00000013481	dab1	ENSHCOP00000013481	ENSHCOP00000013868	Reelin domain-containing protein.	DAB adaptor protein 1a.	0.617
ENSHCOP00000015866	ENSHCOP00000008686	ENSHCOP00000015866	ENSHCOP00000008686	Fork-head domain-containing protein.	Fork-head domain-containing protein.	0.907