19 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	LOC109523313	RAN binding protein 2. (2954 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1111 aa)
	ogt	O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1. (1050 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	acadm	Acyl-CoA dehydrogenase medium chain. (425 aa)
	sirt6	Sirtuin 6. (347 aa)
	DGKQ	Diacylglycerol kinase. (868 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	soga1	Suppressor of glucose, autophagy associated 1. (1663 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109526718	Uncharacterized protein. (162 aa)
	FAM3A	Family with sequence similarity 3 member A. (230 aa)
	fam3c	Family with sequence similarity 3 member C. (232 aa)
	sirt7	Sirtuin 7. (364 aa)
	ddb1	Damage-specific DNA binding protein 1. (1093 aa)
	gnmt	Glycine N-methyltransferase. (296 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109519035	Leptin receptor. (1118 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000019285	LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 a.	0.442
ENSHCOP00000019285	LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 b.	0.442
ENSHCOP00000019285	sirt6	ENSHCOP00000019285	ENSHCOP00000000544	Deacetylase sirtuin-type domain-containing protein.	Sirtuin 6.	0.430
ENSHCOP00000019285	sirt7	ENSHCOP00000019285	ENSHCOP00000012046	Deacetylase sirtuin-type domain-containing protein.	Sirtuin 7.	0.460
ENSHCOP00000019306	LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	Sirtuin 1.	E1A binding protein p300 a.	0.442
ENSHCOP00000019306	LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	Sirtuin 1.	E1A binding protein p300 b.	0.442
ENSHCOP00000019306	sirt6	ENSHCOP00000019306	ENSHCOP00000000544	Sirtuin 1.	Sirtuin 6.	0.430
ENSHCOP00000019306	sirt7	ENSHCOP00000019306	ENSHCOP00000012046	Sirtuin 1.	Sirtuin 7.	0.460
LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	ENSHCOP00000019285	E1A binding protein p300 a.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	ENSHCOP00000019306	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	LOC109523155	ENSHCOP00000007909	ENSHCOP00000003219	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	ddb1	ENSHCOP00000007909	ENSHCOP00000015095	E1A binding protein p300 a.	Damage-specific DNA binding protein 1.	0.419
LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	ENSHCOP00000019285	E1A binding protein p300 b.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	ENSHCOP00000019306	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	LOC109523155	ENSHCOP00000024673	ENSHCOP00000003219	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	ddb1	ENSHCOP00000024673	ENSHCOP00000015095	E1A binding protein p300 b.	Damage-specific DNA binding protein 1.	0.419
LOC109519035	LOC109526718	ENSHCOP00000020185	ENSHCOP00000008370	Leptin receptor.	Uncharacterized protein.	0.859
LOC109523155	LOC109512841	ENSHCOP00000003219	ENSHCOP00000007909	Sirtuin 1.	E1A binding protein p300 a.	0.442
LOC109523155	LOC109514850	ENSHCOP00000003219	ENSHCOP00000024673	Sirtuin 1.	E1A binding protein p300 b.	0.442
LOC109523155	sirt6	ENSHCOP00000003219	ENSHCOP00000000544	Sirtuin 1.	Sirtuin 6.	0.540