95 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	obi1	ORC ubiquitin ligase 1. (629 aa)
	zranb3	Zinc finger, RAN-binding domain containing 3. (1127 aa)
	ZBTB38	Zinc finger and BTB domain containing 38. (1110 aa)
	gins4-2	DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (222 aa)
	ino80	INO80 complex ATPase subunit. (1543 aa)
	actr5	Actin related protein 5; Belongs to the actin family. (595 aa)
	LOC109518507	Geminin DNA replication inhibitor. (224 aa)
	ino80d	INO80 complex subunit Da. (979 aa)
	wrnip1	WRN helicase interacting protein 1. (591 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (329 aa)
	atrx	ATRX chromatin remodeler. (1645 aa)
	tipin	TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (281 aa)
	nfrkb	Nuclear factor related to kappaB binding protein. (1123 aa)
	mcrs1	Microspherule protein 1. (464 aa)
	cdc7	Cell division cycle 7 homolog (S. cerevisiae); Belongs to the protein kinase superfamily. (486 aa)
	mcm4	DNA helicase; Belongs to the MCM family. (939 aa)
	polg2	Polymerase (DNA directed), gamma 2, accessory subunit. (454 aa)
	aicda	Activation-induced cytidine deaminase. (189 aa)
	ino80e	INO80 complex subunit E. (236 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	rfc2	Replication factor C (activator 1) 2. (244 aa)
	gtpbp4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (635 aa)
	blm	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (966 aa)
	ENSHCOP00000023012	Uncharacterized protein. (1155 aa)
	e2f7	E2F transcription factor 7. (662 aa)
	ENSHCOP00000022006	Uncharacterized protein. (852 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	orc5	Origin recognition complex, subunit 5. (452 aa)
	ENSHCOP00000026411	Uncharacterized protein. (408 aa)
	gins2	DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (186 aa)
	gins3	GINS complex subunit 3. (211 aa)
	Atr	Uncharacterized protein. (106 aa)
	dna2	DNA replication helicase/nuclease 2. (1305 aa)
	baz1a	Bromodomain adjacent to zinc finger domain 1A. (1129 aa)
	vps41	zf-C2H2_3 domain-containing protein. (2951 aa)
	Gmnc	Uncharacterized protein. (262 aa)
	smc3	Structural maintenance of chromosomes protein. (1216 aa)
	ENPP7	Uncharacterized protein. (434 aa)
	LOC109512602	Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily. (421 aa)
	pds5a	PDS5 cohesin associated factor A. (1213 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (658 aa)
	LOC109521650	Cdkn1a interacting zinc finger protein 1a. (668 aa)
	igfbp2	Insulin-like growth factor binding protein 2a. (284 aa)
	DONSON	Downstream neighbor of SON. (568 aa)
	cdt1	Chromatin licensing and DNA replication factor 1. (617 aa)
	LOC109517783	Bromodomain and PHD finger containing, 3b. (1155 aa)
	dscc1	DNA replication and sister chromatid cohesion 1. (390 aa)
	e2f8	E2F transcription factor 8. (866 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
	LOC109527038	ATPase family AAA domain containing 5a. (1619 aa)
	ENSHCOP00000005103	Uncharacterized protein. (167 aa)
	LOC109527782	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (449 aa)
	dbf4	DBF4-type domain-containing protein. (388 aa)
	Enpp7	Ectonucleotide pyrophosphatase/phosphodiesterase 7. (432 aa)
	terf1	TRF domain-containing protein. (431 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (471 aa)
	jade2	Jade family PHD finger 2. (728 aa)
	ENSHCOP00000006866	Uncharacterized protein. (1585 aa)
	ENSHCOP00000007515	Uncharacterized protein. (89 aa)
	lig3	DNA ligase. (993 aa)
	ENSHCOP00000008088	Testis specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family. (401 aa)
	LOC109512249	Zgc:153896. (449 aa)
	ENSHCOP00000008605	F-box domain-containing protein. (729 aa)
	mcm2	Minichromosome maintenance complex component 2; Belongs to the MCM family. (759 aa)
	ino80b	INO80 complex subunit B. (338 aa)
	stoml2	Stomatin (EPB72)-like 2. (349 aa)
	ESCO2	Establishment of sister chromatid cohesion N-acetyltransferase 2. (614 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1267 aa)
	Ucn	CRF domain-containing protein. (134 aa)
	mettl4	Methyltransferase like 4; Belongs to the MT-A70-like family. (348 aa)
	LOC109516619	Si:ch73-290k24.6. (280 aa)
	rfc4	Replication factor C (activator 1) 4. (331 aa)
	cdan1	Codanin 1. (1038 aa)
	orc3	Origin recognition complex, subunit 3. (684 aa)
	chtf8	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (135 aa)
	ENSHCOP00000012576	DWNN domain-containing protein. (68 aa)
	ENSHCOP00000012585	Uncharacterized protein. (208 aa)
	ino80c	INO80 complex subunit C. (192 aa)
	wapl	WAPL cohesin release factor a. (1146 aa)
	smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (839 aa)
	ssbp1	Single-stranded DNA binding protein 1. (147 aa)
	ZNF830	Zinc finger protein 830. (344 aa)
	LOC109518579	WAPL cohesin release factor b. (1173 aa)
	chrac1	Chromatin accessibility complex subunit 1. (121 aa)
	WIZ	WIZ zinc finger. (945 aa)
	ENSHCOP00000021557	DWNN domain-containing protein. (156 aa)
	egf	Epidermal growth factor. (979 aa)
	timeless	Timeless circadian clock. (1222 aa)
	ENSHCOP00000016557	Uncharacterized protein. (466 aa)
	chtf18	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (922 aa)
	LOC109529213	Bromodomain and PHD finger containing, 3a. (1200 aa)
	tfpt	TCF3 (E2A) fusion partner. (198 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	ENSHCOP00000017784	Uncharacterized protein. (123 aa)
	ENPP7-2	Ectonucleotide pyrophosphatase/phosphodiesterase 7. (266 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atr	ENSHCOP00000007515	ENSHCOP00000025135	ENSHCOP00000007515	Uncharacterized protein.	Uncharacterized protein.	0.801
Atr	ENSHCOP00000008605	ENSHCOP00000025135	ENSHCOP00000008605	Uncharacterized protein.	F-box domain-containing protein.	0.810
Atr	ENSHCOP00000023012	ENSHCOP00000025135	ENSHCOP00000023012	Uncharacterized protein.	Uncharacterized protein.	0.611
Atr	ENSHCOP00000026411	ENSHCOP00000025135	ENSHCOP00000026411	Uncharacterized protein.	Uncharacterized protein.	0.415
Atr	LOC109527038	ENSHCOP00000025135	ENSHCOP00000004580	Uncharacterized protein.	ATPase family AAA domain containing 5a.	0.415
Atr	blm	ENSHCOP00000025135	ENSHCOP00000023146	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.973
Atr	cdc7	ENSHCOP00000025135	ENSHCOP00000027627	Uncharacterized protein.	Cell division cycle 7 homolog (S. cerevisiae); Belongs to the protein kinase superfamily.	0.994
Atr	chtf18	ENSHCOP00000025135	ENSHCOP00000016852	Uncharacterized protein.	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).	0.662
Atr	dbf4	ENSHCOP00000025135	ENSHCOP00000005456	Uncharacterized protein.	DBF4-type domain-containing protein.	0.897
Atr	dna2	ENSHCOP00000025135	ENSHCOP00000024731	Uncharacterized protein.	DNA replication helicase/nuclease 2.	0.896
Atr	lig3	ENSHCOP00000025135	ENSHCOP00000007928	Uncharacterized protein.	DNA ligase.	0.420
Atr	mcm2	ENSHCOP00000025135	ENSHCOP00000009483	Uncharacterized protein.	Minichromosome maintenance complex component 2; Belongs to the MCM family.	0.804
Atr	mcm4	ENSHCOP00000025135	ENSHCOP00000027508	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.820
Atr	orc5	ENSHCOP00000025135	ENSHCOP00000026536	Uncharacterized protein.	Origin recognition complex, subunit 5.	0.685
Atr	pcna	ENSHCOP00000025135	ENSHCOP00000003160	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.745
Atr	rfc2	ENSHCOP00000025135	ENSHCOP00000023251	Uncharacterized protein.	Replication factor C (activator 1) 2.	0.818
Atr	rfc3	ENSHCOP00000025135	ENSHCOP00000021883	Uncharacterized protein.	Replication factor C (activator 1) 3.	0.818
Atr	rfc4	ENSHCOP00000025135	ENSHCOP00000011023	Uncharacterized protein.	Replication factor C (activator 1) 4.	0.801
Atr	rfc5	ENSHCOP00000025135	ENSHCOP00000017308	Uncharacterized protein.	Replication factor C (activator 1) 5.	0.818
Atr	smc3	ENSHCOP00000025135	ENSHCOP00000000847	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.580