39 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000009180	Uncharacterized protein. (169 aa)
	ube3a	Ubiquitin protein ligase E3A. (809 aa)
	tnfaip6	Tumor necrosis factor, alpha-induced protein 6. (263 aa)
	UBE3A	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. (891 aa)
	spo11	SPO11 initiator of meiotic double stranded breaks. (375 aa)
	LOC109514703	Mothers against decapentaplegic homolog. (503 aa)
	ZNF830	Zinc finger protein 830. (344 aa)
	gas2	Growth arrest-specific 2a. (320 aa)
	GPR149	G protein-coupled receptor 149. (524 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	pla2g4a	Phospholipase A2. (746 aa)
	LOC109523154	Luteinizing hormone, beta polypeptide. (138 aa)
	LOC109514211	Mothers against decapentaplegic homolog. (510 aa)
	ENSHCOP00000023012	Uncharacterized protein. (1155 aa)
	LOC109511273	TGF_BETA_2 domain-containing protein. (531 aa)
	ENSHCOP00000023352	S-phase cyclin A-associated protein in the ER. (640 aa)
	inhba	Inhibin subunit beta Aa. (408 aa)
	LOC109531890	Anti-Mullerian hormone. (523 aa)
	msh4	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (894 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	sgpl1	Sphingosine-1-phosphate lyase 1. (480 aa)
	eif2b4	Eukaryotic translation initiation factor 2B, subunit 4 delta; Belongs to the eIF-2B alpha/beta/delta subunits family. (525 aa)
	ENSHCOP00000005461	Mothers against decapentaplegic homolog. (583 aa)
	INHBB	Inhibin subunit beta B. (415 aa)
	LOC109528940	Inhibin subunit beta B. (384 aa)
	nrip1	Nuclear receptor interacting protein 1b. (1260 aa)
	ENSHCOP00000007987	CCAAT enhancer binding protein beta. (289 aa)
	bax	BCL2 associated X, apoptosis regulator a. (255 aa)
	LOC109516498	Bone morphogenetic protein 15. (406 aa)
	ENSHCOP00000027301	TGF_BETA_2 domain-containing protein. (265 aa)
	ENSHCOP00000027369	Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b. (203 aa)
	eif2b5	Eukaryotic translation initiation factor 2B, subunit 5 epsilon. (703 aa)
	fancg	FA complementation group G. (584 aa)
	fzd4	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family. (531 aa)
	LOC109518876	TGF_BETA_2 domain-containing protein. (380 aa)
	ptx3	Pentraxin 3, long b. (472 aa)
	ENSHCOP00000009368	Uncharacterized protein. (120 aa)
	Atm	TAN domain-containing protein. (311 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	ENSHCOP00000009180	ENSHCOP00000009193	ENSHCOP00000009180	TAN domain-containing protein.	Uncharacterized protein.	0.929
Atm	ENSHCOP00000023012	ENSHCOP00000009193	ENSHCOP00000023012	TAN domain-containing protein.	Uncharacterized protein.	0.887
Atm	fancg	ENSHCOP00000009193	ENSHCOP00000012620	TAN domain-containing protein.	FA complementation group G.	0.493
Atm	msh4	ENSHCOP00000009193	ENSHCOP00000002957	TAN domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.677
Atm	spo11	ENSHCOP00000009193	ENSHCOP00000015057	TAN domain-containing protein.	SPO11 initiator of meiotic double stranded breaks.	0.583
ENSHCOP00000005461	ENSHCOP00000007987	ENSHCOP00000005461	ENSHCOP00000007987	Mothers against decapentaplegic homolog.	CCAAT enhancer binding protein beta.	0.468
ENSHCOP00000005461	ENSHCOP00000027301	ENSHCOP00000005461	ENSHCOP00000027301	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.437
ENSHCOP00000005461	INHBB	ENSHCOP00000005461	ENSHCOP00000005711	Mothers against decapentaplegic homolog.	Inhibin subunit beta B.	0.437
ENSHCOP00000005461	LOC109518876	ENSHCOP00000005461	ENSHCOP00000010667	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.437
ENSHCOP00000005461	LOC109528940	ENSHCOP00000005461	ENSHCOP00000006236	Mothers against decapentaplegic homolog.	Inhibin subunit beta B.	0.437
ENSHCOP00000005461	inhba	ENSHCOP00000005461	ENSHCOP00000023955	Mothers against decapentaplegic homolog.	Inhibin subunit beta Aa.	0.437
ENSHCOP00000007987	ENSHCOP00000005461	ENSHCOP00000007987	ENSHCOP00000005461	CCAAT enhancer binding protein beta.	Mothers against decapentaplegic homolog.	0.468
ENSHCOP00000007987	LOC109514211	ENSHCOP00000007987	ENSHCOP00000022820	CCAAT enhancer binding protein beta.	Mothers against decapentaplegic homolog.	0.468
ENSHCOP00000007987	LOC109514703	ENSHCOP00000007987	ENSHCOP00000015228	CCAAT enhancer binding protein beta.	Mothers against decapentaplegic homolog.	0.468
ENSHCOP00000009180	Atm	ENSHCOP00000009180	ENSHCOP00000009193	Uncharacterized protein.	TAN domain-containing protein.	0.929
ENSHCOP00000009180	ENSHCOP00000023012	ENSHCOP00000009180	ENSHCOP00000023012	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSHCOP00000009180	msh4	ENSHCOP00000009180	ENSHCOP00000002957	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.627
ENSHCOP00000009180	spo11	ENSHCOP00000009180	ENSHCOP00000015057	Uncharacterized protein.	SPO11 initiator of meiotic double stranded breaks.	0.578
ENSHCOP00000023012	Atm	ENSHCOP00000023012	ENSHCOP00000009193	Uncharacterized protein.	TAN domain-containing protein.	0.887
ENSHCOP00000023012	ENSHCOP00000009180	ENSHCOP00000023012	ENSHCOP00000009180	Uncharacterized protein.	Uncharacterized protein.	0.830