20 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ikbip	Uncharacterized protein. (387 aa)
	LOC109525107	X-ray repair complementing defective repair in Chinese hamster cells 4. (386 aa)
	kars1	Lysine--tRNA ligase. (598 aa)
	sfrp2	Secreted frizzled-related protein 2. (299 aa)
	xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6. (609 aa)
	ENSHCOP00000009180	Uncharacterized protein. (169 aa)
	Atm	TAN domain-containing protein. (311 aa)
	LOC109525531	Uncharacterized protein. (324 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (946 aa)
	xrcc4	Uncharacterized protein. (263 aa)
	ercc1	Excision repair cross-complementation group 1. (338 aa)
	ercc8	Excision repair cross-complementation group 8. (384 aa)
	tp53bp1	Tumor protein p53 binding protein, 1. (1495 aa)
	ENSHCOP00000020910	Uncharacterized protein. (304 aa)
	xrcc2	Rad51 domain-containing protein. (353 aa)
	ENSHCOP00000023012	Uncharacterized protein. (1155 aa)
	blm	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (966 aa)
	lig4	DNA ligase. (910 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (729 aa)
	ercc6	Excision repair cross-complementation group 6. (1377 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	ENSHCOP00000009180	ENSHCOP00000009193	ENSHCOP00000009180	TAN domain-containing protein.	Uncharacterized protein.	0.929
Atm	ENSHCOP00000023012	ENSHCOP00000009193	ENSHCOP00000023012	TAN domain-containing protein.	Uncharacterized protein.	0.887
Atm	LOC109525107	ENSHCOP00000009193	ENSHCOP00000000820	TAN domain-containing protein.	X-ray repair complementing defective repair in Chinese hamster cells 4.	0.467
Atm	blm	ENSHCOP00000009193	ENSHCOP00000023146	TAN domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.909
Atm	ercc1	ENSHCOP00000009193	ENSHCOP00000014052	TAN domain-containing protein.	Excision repair cross-complementation group 1.	0.616
Atm	lig4	ENSHCOP00000009193	ENSHCOP00000023467	TAN domain-containing protein.	DNA ligase.	0.604
Atm	msh2	ENSHCOP00000009193	ENSHCOP00000013100	TAN domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.769
Atm	tp53bp1	ENSHCOP00000009193	ENSHCOP00000020451	TAN domain-containing protein.	Tumor protein p53 binding protein, 1.	0.974
Atm	xrcc2	ENSHCOP00000009193	ENSHCOP00000021453	TAN domain-containing protein.	Rad51 domain-containing protein.	0.714
Atm	xrcc5	ENSHCOP00000009193	ENSHCOP00000026645	TAN domain-containing protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.910
Atm	xrcc6	ENSHCOP00000009193	ENSHCOP00000007729	TAN domain-containing protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.917
ENSHCOP00000009180	Atm	ENSHCOP00000009180	ENSHCOP00000009193	Uncharacterized protein.	TAN domain-containing protein.	0.929
ENSHCOP00000009180	ENSHCOP00000023012	ENSHCOP00000009180	ENSHCOP00000023012	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSHCOP00000009180	blm	ENSHCOP00000009180	ENSHCOP00000023146	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.890
ENSHCOP00000009180	ercc1	ENSHCOP00000009180	ENSHCOP00000014052	Uncharacterized protein.	Excision repair cross-complementation group 1.	0.589
ENSHCOP00000009180	lig4	ENSHCOP00000009180	ENSHCOP00000023467	Uncharacterized protein.	DNA ligase.	0.604
ENSHCOP00000009180	msh2	ENSHCOP00000009180	ENSHCOP00000013100	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.675
ENSHCOP00000009180	tp53bp1	ENSHCOP00000009180	ENSHCOP00000020451	Uncharacterized protein.	Tumor protein p53 binding protein, 1.	0.954
ENSHCOP00000009180	xrcc2	ENSHCOP00000009180	ENSHCOP00000021453	Uncharacterized protein.	Rad51 domain-containing protein.	0.649
ENSHCOP00000009180	xrcc5	ENSHCOP00000009180	ENSHCOP00000026645	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.875