24 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000009180	Uncharacterized protein. (169 aa)
	map3k20	Uncharacterized protein. (788 aa)
	xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6. (609 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (471 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1232 aa)
	fancd2	FA complementation group D2. (1328 aa)
	ENSHCOP00000002506	BCL2 apoptosis regulator b. (225 aa)
	ENSHCOP00000002481	BCL2 apoptosis regulator b. (221 aa)
	ENSHCOP00000000931	Protein kinase domain-containing protein. (480 aa)
	myc	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (433 aa)
	ercc6	Excision repair cross-complementation group 6. (1377 aa)
	xrcc5	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (729 aa)
	bax	BCL2 associated X, apoptosis regulator a. (255 aa)
	Atr	Uncharacterized protein. (106 aa)
	lig4	DNA ligase. (910 aa)
	ENSHCOP00000023012	Uncharacterized protein. (1155 aa)
	xrcc2	Rad51 domain-containing protein. (353 aa)
	LOC109508060	Zgc:153993. (204 aa)
	chek2	Checkpoint kinase 2. (518 aa)
	LOC109517903	Crystallin, alpha B, a; Belongs to the small heat shock protein (HSP20) family. (164 aa)
	dcun1d3	DCN1-like protein. (326 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (839 aa)
	Atm	TAN domain-containing protein. (311 aa)
	men1	Multiple endocrine neoplasia I. (611 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	Atr	ENSHCOP00000009193	ENSHCOP00000025135	TAN domain-containing protein.	Uncharacterized protein.	0.997
Atm	ENSHCOP00000009180	ENSHCOP00000009193	ENSHCOP00000009180	TAN domain-containing protein.	Uncharacterized protein.	0.929
Atm	ENSHCOP00000023012	ENSHCOP00000009193	ENSHCOP00000023012	TAN domain-containing protein.	Uncharacterized protein.	0.887
Atm	chek2	ENSHCOP00000009193	ENSHCOP00000017184	TAN domain-containing protein.	Checkpoint kinase 2.	0.994
Atm	fancd2	ENSHCOP00000009193	ENSHCOP00000003317	TAN domain-containing protein.	FA complementation group D2.	0.680
Atm	lig4	ENSHCOP00000009193	ENSHCOP00000023467	TAN domain-containing protein.	DNA ligase.	0.604
Atm	myc	ENSHCOP00000009193	ENSHCOP00000000380	TAN domain-containing protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.571
Atm	xrcc2	ENSHCOP00000009193	ENSHCOP00000021453	TAN domain-containing protein.	Rad51 domain-containing protein.	0.714
Atm	xrcc5	ENSHCOP00000009193	ENSHCOP00000026645	TAN domain-containing protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.910
Atm	xrcc6	ENSHCOP00000009193	ENSHCOP00000007729	TAN domain-containing protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.917
Atr	Atm	ENSHCOP00000025135	ENSHCOP00000009193	Uncharacterized protein.	TAN domain-containing protein.	0.997
Atr	ENSHCOP00000009180	ENSHCOP00000025135	ENSHCOP00000009180	Uncharacterized protein.	Uncharacterized protein.	0.971
Atr	ENSHCOP00000023012	ENSHCOP00000025135	ENSHCOP00000023012	Uncharacterized protein.	Uncharacterized protein.	0.611
Atr	chek2	ENSHCOP00000025135	ENSHCOP00000017184	Uncharacterized protein.	Checkpoint kinase 2.	0.996
Atr	ercc6	ENSHCOP00000025135	ENSHCOP00000027896	Uncharacterized protein.	Excision repair cross-complementation group 6.	0.558
Atr	fancd2	ENSHCOP00000025135	ENSHCOP00000003317	Uncharacterized protein.	FA complementation group D2.	0.875
Atr	lig4	ENSHCOP00000025135	ENSHCOP00000023467	Uncharacterized protein.	DNA ligase.	0.657
Atr	xrcc5	ENSHCOP00000025135	ENSHCOP00000026645	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.712
Atr	xrcc6	ENSHCOP00000025135	ENSHCOP00000007729	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.828
ENSHCOP00000002481	LOC109508060	ENSHCOP00000002481	ENSHCOP00000020948	BCL2 apoptosis regulator b.	Zgc:153993.	0.771