31 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109528676	PNPLA domain-containing protein. (478 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (563 aa)
	LOC109530015	Zgc:158403. (564 aa)
	PPARG	Peroxisome proliferator activated receptor gamma. (575 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (462 aa)
	pnpla2	Patatin-like phospholipase domain containing 2. (525 aa)
	LOC109531926	Lipoprotein lipase. (284 aa)
	LOC109509783	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	LOC109532313	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans. (520 aa)
	ttc39a	Tetratricopeptide repeat domain 39A. (547 aa)
	TTC39B	Tetratricopeptide repeat domain 39B. (582 aa)
	PPARA	Peroxisome proliferator-activated receptor alpha b. (430 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	srebf2	Sterol regulatory element binding transcription factor 2. (1122 aa)
	LOC109513802	Phospholipase A(2). (162 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (375 aa)
	LOC109519522	ANK_REP_REGION domain-containing protein. (340 aa)
	ENSHCOP00000008018	Vitellogenin domain-containing protein. (421 aa)
	LOC109523728	Peroxisome proliferator-activated receptor alpha a. (479 aa)
	alkbh7	AlkB homolog 7. (231 aa)
	srebf1	Sterol regulatory element binding transcription factor 1. (1179 aa)
	LOC109515322	Uncharacterized protein. (488 aa)
	ENSHCOP00000014342	PNPLA domain-containing protein. (270 aa)
	LOC109508122	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (283 aa)
	LOC109516797	Apolipoprotein Bb, tandem duplicate 2. (3740 aa)
	ENSHCOP00000022960	Vitellogenin domain-containing protein. (781 aa)
	LOC109508327	Tetratricopeptide repeat domain 39B. (637 aa)
	vstm2a	V-set and transmembrane domain containing 2A. (232 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	zc3h12a	Si:dkey-206d17.12. (517 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000008018	scarb1	ENSHCOP00000008018	ENSHCOP00000016725	Vitellogenin domain-containing protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.743
ENSHCOP00000022960	scarb1	ENSHCOP00000022960	ENSHCOP00000016725	Vitellogenin domain-containing protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.743
LOC109509783	LOC109519522	ENSHCOP00000026447	ENSHCOP00000006784	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	ANK_REP_REGION domain-containing protein.	0.905
LOC109516797	scarb1	ENSHCOP00000022475	ENSHCOP00000016725	Apolipoprotein Bb, tandem duplicate 2.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.743
LOC109519522	LOC109509783	ENSHCOP00000006784	ENSHCOP00000026447	ANK_REP_REGION domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.905
LOC109523728	PPARA	ENSHCOP00000010212	ENSHCOP00000003218	Peroxisome proliferator-activated receptor alpha a.	Peroxisome proliferator-activated receptor alpha b.	0.901
LOC109523728	nr1h3	ENSHCOP00000010212	ENSHCOP00000015233	Peroxisome proliferator-activated receptor alpha a.	Nuclear receptor subfamily 1, group H, member 3.	0.451
LOC109528676	LOC109532313	ENSHCOP00000018115	ENSHCOP00000000886	PNPLA domain-containing protein.	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans.	0.927
LOC109528676	pnpla2	ENSHCOP00000018115	ENSHCOP00000016787	PNPLA domain-containing protein.	Patatin-like phospholipase domain containing 2.	0.909
LOC109532313	LOC109528676	ENSHCOP00000000886	ENSHCOP00000018115	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans.	PNPLA domain-containing protein.	0.927
LOC109532313	pnpla2	ENSHCOP00000000886	ENSHCOP00000016787	Lipoprotein lipase; Key enzyme in triglyceride metabolism. Catalyzes the hydrolysis of triglycerides from circulating chylomicrons and very low density lipoproteins (VLDL), and thereby plays an important role in lipid clearance from the blood stream, lipid utilization and storage. Mediates margination of triglyceride-rich lipoprotein particles in capillaries. Recruited to its site of action on the luminal surface of vascular endothelium by binding to GPIHBP1 and cell surface heparan sulfate proteoglycans.	Patatin-like phospholipase domain containing 2.	0.924
PPARA	LOC109523728	ENSHCOP00000003218	ENSHCOP00000010212	Peroxisome proliferator-activated receptor alpha b.	Peroxisome proliferator-activated receptor alpha a.	0.901
PPARA	nr1h3	ENSHCOP00000003218	ENSHCOP00000015233	Peroxisome proliferator-activated receptor alpha b.	Nuclear receptor subfamily 1, group H, member 3.	0.451
PPARG	nr1h3	ENSHCOP00000016088	ENSHCOP00000015233	Peroxisome proliferator activated receptor gamma.	Nuclear receptor subfamily 1, group H, member 3.	0.689
PPARG	srebf1	ENSHCOP00000016088	ENSHCOP00000013700	Peroxisome proliferator activated receptor gamma.	Sterol regulatory element binding transcription factor 1.	0.629
PPARG	srebf2	ENSHCOP00000016088	ENSHCOP00000004492	Peroxisome proliferator activated receptor gamma.	Sterol regulatory element binding transcription factor 2.	0.426
nr1h3	LOC109523728	ENSHCOP00000015233	ENSHCOP00000010212	Nuclear receptor subfamily 1, group H, member 3.	Peroxisome proliferator-activated receptor alpha a.	0.451
nr1h3	PPARA	ENSHCOP00000015233	ENSHCOP00000003218	Nuclear receptor subfamily 1, group H, member 3.	Peroxisome proliferator-activated receptor alpha b.	0.451
nr1h3	PPARG	ENSHCOP00000015233	ENSHCOP00000016088	Nuclear receptor subfamily 1, group H, member 3.	Peroxisome proliferator activated receptor gamma.	0.689
nr1h3	srebf1	ENSHCOP00000015233	ENSHCOP00000013700	Nuclear receptor subfamily 1, group H, member 3.	Sterol regulatory element binding transcription factor 1.	0.518