85 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109523068	Atonal bHLH transcription factor 7. (142 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (598 aa)
	magi2	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1296 aa)
	LOC109513575	Ig-like domain-containing protein. (225 aa)
	LOC109513534	Uncharacterized protein. (259 aa)
	eef2k	Eukaryotic elongation factor 2 kinase. (737 aa)
	Caprin2	C1q domain-containing protein. (170 aa)
	ror2	Receptor tyrosine kinase-like orphan receptor 2; Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily. (915 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	arsi	Arylsulfatase family, member Ia. (570 aa)
	Reln	Uncharacterized protein. (877 aa)
	ENSHCOP00000026026	Uncharacterized protein. (863 aa)
	ENSHCOP00000026231	Ig-like domain-containing protein. (179 aa)
	LOC109507599	Uncharacterized protein. (288 aa)
	ENSHCOP00000027738	Sulfatase domain-containing protein. (100 aa)
	dbn1	Drebrin 1. (482 aa)
	LOC109528733	Protein kinase C and casein kinase substrate in neurons 1a. (439 aa)
	PTK7	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family. (1058 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1561 aa)
	ENSHCOP00000021782	Teneurin N-terminal domain-containing protein. (214 aa)
	LOC109514330	Cell cycle associated protein 1a. (632 aa)
	LOC109524410	Si:dkey-237h12.3. (2490 aa)
	ENSHCOP00000021585	Uncharacterized protein. (110 aa)
	LOC109530503	Protein tyrosine phosphatase non-receptor type 5. (386 aa)
	LOC109523652	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1351 aa)
	LOC109532545	BAI1-associated protein 2a. (553 aa)
	adnp	Activity-dependent neuroprotector homeobox b. (1032 aa)
	nckipsd	NCK interacting protein with SH3 domain. (715 aa)
	ror1	Receptor tyrosine kinase-like orphan receptor 1; Belongs to the protein kinase superfamily. Tyr protein kinase family. (886 aa)
	ENSHCOP00000019697	Ig-like domain-containing protein. (504 aa)
	LOC109517058	Scavenger receptor class B, member 2c; Belongs to the CD36 family. (479 aa)
	dbnl	Drebrin-like b. (475 aa)
	ENSHCOP00000017691	Teneurin transmembrane protein 3. (199 aa)
	ntrk3	Tyrosine-protein kinase receptor. (759 aa)
	twf2	Twinfilin actin-binding protein 2a. (347 aa)
	LOC109525257	Scavenger receptor class B, member 2a; Belongs to the CD36 family. (530 aa)
	LOC109530718	Si:dkey-40c11.2. (621 aa)
	LOC109527923	Tyrosine-protein kinase receptor. (715 aa)
	ENSHCOP00000015931	Ig-like domain-containing protein. (132 aa)
	LOC109522024	ALK and LTK ligand 1. (165 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (179 aa)
	LOC109514691	Tyrosine-protein kinase. (1079 aa)
	nptn	Neuroplastin b. (397 aa)
	LOC109521915	Cordon-bleu WH2 repeat protein. (1443 aa)
	sf3a2	Splicing factor 3a, subunit 2. (290 aa)
	ENSHCOP00000000441	Arylsulfatase family, member J. (550 aa)
	rapgef1	Rap guanine nucleotide exchange factor (GEF) 1b. (1076 aa)
	LOC109508356	Protein kinase C and casein kinase substrate in neurons 1b. (445 aa)
	LOC109521723	Uncharacterized protein. (2531 aa)
	LOC109532260	Tyrosine-protein kinase. (1170 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (966 aa)
	ret	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands. (1075 aa)
	twf1	Twinfilin actin-binding protein 1a. (350 aa)
	ARSB	Arylsulfatase B. (511 aa)
	cux2	Homeobox protein cut-like. (1323 aa)
	LOC109522467	Twinfilin actin-binding protein 2b. (345 aa)
	LOC109513079	Tyrosine-protein kinase receptor. (786 aa)
	fez1	Fasciculation and elongation protein zeta 1 (zygin I). (406 aa)
	CRTC1	CREB regulated transcription coactivator 1b. (564 aa)
	LOC109531653	Uncharacterized protein. (270 aa)
	LOC109531655	Apolipoprotein Eb. (297 aa)
	LOC109527733	Parvalbumin 8; Belongs to the parvalbumin family. (109 aa)
	tnn	Tenascin N. (914 aa)
	ENSHCOP00000007634	Uncharacterized protein. (614 aa)
	ENSHCOP00000007872	Uncharacterized protein. (348 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	ntrk1	Tyrosine-protein kinase receptor. (563 aa)
	tenm4	Teneurin transmembrane protein 4. (2457 aa)
	ENSHCOP00000008601	Ig-like domain-containing protein. (466 aa)
	ntrk2	Tyrosine-protein kinase receptor. (749 aa)
	LOC109513576	Sodium channel, voltage-gated, type I, beta b. (238 aa)
	Fam150b	Uncharacterized protein. (92 aa)
	creb3l2	cAMP responsive element binding protein 3-like 2. (542 aa)
	ENSHCOP00000015325	IMD domain-containing protein. (151 aa)
	psmc3ip	Reticulophagy regulator family member 3. (497 aa)
	caprin1	Cell cycle associated protein 1b. (693 aa)
	ENSHCOP00000013481	Reelin domain-containing protein. (267 aa)
	ENSHCOP00000013158	Scavenger receptor class F, member 1. (929 aa)
	LOC109518010	Stathmin; Belongs to the stathmin family. (176 aa)
	amigo3	Adhesion molecule with Ig-like domain 3. (506 aa)
	fbxo38	F-box protein 38. (1193 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (839 aa)
	LOC109512107	Sodium channel, voltage-gated, type I, beta a. (217 aa)
	FIG4	FIG4 phosphoinositide 5-phosphatase. (887 aa)
	ndnf	Neuron-derived neurotrophic factor. (532 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Caprin2	LOC109514330	ENSHCOP00000024058	ENSHCOP00000021767	C1q domain-containing protein.	Cell cycle associated protein 1a.	0.891
Caprin2	caprin1	ENSHCOP00000024058	ENSHCOP00000013553	C1q domain-containing protein.	Cell cycle associated protein 1b.	0.897
ENSHCOP00000000441	ENSHCOP00000027738	ENSHCOP00000000441	ENSHCOP00000027738	Arylsulfatase family, member J.	Sulfatase domain-containing protein.	0.536
ENSHCOP00000007634	fez1	ENSHCOP00000007634	ENSHCOP00000006172	Uncharacterized protein.	Fasciculation and elongation protein zeta 1 (zygin I).	0.440
ENSHCOP00000013481	ENSHCOP00000026026	ENSHCOP00000013481	ENSHCOP00000026026	Reelin domain-containing protein.	Uncharacterized protein.	0.946
ENSHCOP00000013481	Reln	ENSHCOP00000013481	ENSHCOP00000026006	Reelin domain-containing protein.	Uncharacterized protein.	0.938
ENSHCOP00000015325	LOC109514691	ENSHCOP00000015325	ENSHCOP00000015530	IMD domain-containing protein.	Tyrosine-protein kinase.	0.470
ENSHCOP00000015325	LOC109532260	ENSHCOP00000015325	ENSHCOP00000001735	IMD domain-containing protein.	Tyrosine-protein kinase.	0.470
ENSHCOP00000015325	nckipsd	ENSHCOP00000015325	ENSHCOP00000020243	IMD domain-containing protein.	NCK interacting protein with SH3 domain.	0.778
ENSHCOP00000015931	ntrk1	ENSHCOP00000015931	ENSHCOP00000007996	Ig-like domain-containing protein.	Tyrosine-protein kinase receptor.	0.491
ENSHCOP00000017691	LOC109521723	ENSHCOP00000017691	ENSHCOP00000000812	Teneurin transmembrane protein 3.	Uncharacterized protein.	0.794
ENSHCOP00000017691	LOC109524410	ENSHCOP00000017691	ENSHCOP00000021755	Teneurin transmembrane protein 3.	Si:dkey-237h12.3.	0.751
ENSHCOP00000017691	tenm4	ENSHCOP00000017691	ENSHCOP00000008515	Teneurin transmembrane protein 3.	Teneurin transmembrane protein 4.	0.695
ENSHCOP00000021585	LOC109512107	ENSHCOP00000021585	ENSHCOP00000009875	Uncharacterized protein.	Sodium channel, voltage-gated, type I, beta a.	0.907
ENSHCOP00000021782	LOC109521723	ENSHCOP00000021782	ENSHCOP00000000812	Teneurin N-terminal domain-containing protein.	Uncharacterized protein.	0.861
ENSHCOP00000021782	LOC109524410	ENSHCOP00000021782	ENSHCOP00000021755	Teneurin N-terminal domain-containing protein.	Si:dkey-237h12.3.	0.877
ENSHCOP00000021782	tenm4	ENSHCOP00000021782	ENSHCOP00000008515	Teneurin N-terminal domain-containing protein.	Teneurin transmembrane protein 4.	0.716
ENSHCOP00000026026	ENSHCOP00000013481	ENSHCOP00000026026	ENSHCOP00000013481	Uncharacterized protein.	Reelin domain-containing protein.	0.946
ENSHCOP00000026231	LOC109507599	ENSHCOP00000026231	ENSHCOP00000026239	Ig-like domain-containing protein.	Uncharacterized protein.	0.899
ENSHCOP00000027738	ENSHCOP00000000441	ENSHCOP00000027738	ENSHCOP00000000441	Sulfatase domain-containing protein.	Arylsulfatase family, member J.	0.536