41 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Traf3ip2	SEFIR domain-containing protein. (114 aa)
	cebpg	CCAAT enhancer binding protein gamma. (246 aa)
	LOC109526980	Galectin. (134 aa)
	LOC109511934	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (227 aa)
	LOC109517348	Sp3b transcription factor. (632 aa)
	rabl3	RAB, member of RAS oncogene family-like 3. (219 aa)
	ENSHCOP00000015116	Uncharacterized protein. (622 aa)
	itfg2	Integrin alpha FG-GAP repeat containing 2. (418 aa)
	nkx2-3	NK2 homeobox 3. (338 aa)
	LOC109511093	BHLH domain-containing protein. (391 aa)
	cmtm7	CKLF-like MARVEL transmembrane domain containing 7. (160 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1232 aa)
	LOC109531236	MALT paracaspase 3. (638 aa)
	cd79a	CD79a molecule, immunoglobulin-associated alpha. (215 aa)
	rag1	V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...] (1071 aa)
	rag2	Recombination activating gene 2. (534 aa)
	DCAF1	DDB1 and CUL4 associated factor 1. (1477 aa)
	dnajb9	DnaJ heat shock protein family (Hsp40) member B9b. (217 aa)
	LOC109508060	Zgc:153993. (204 aa)
	zbtb1	Zinc finger and BTB domain containing 1. (626 aa)
	ENSHCOP00000004818	DHR-1 domain-containing protein; Belongs to the DOCK family. (145 aa)
	fnip1	Folliculin interacting protein 1. (1044 aa)
	NKX2-3	NK2 homeobox 3. (273 aa)
	gps2	G protein pathway suppressor 2. (339 aa)
	ENSHCOP00000000810	MALT paracaspase 2. (513 aa)
	card11	Caspase recruitment domain family, member 11. (1163 aa)
	ITM2A	Integral membrane protein 2A. (246 aa)
	ENSHCOP00000004798	PH domain-containing protein. (447 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	SP3	Sp3a transcription factor. (668 aa)
	LOC109513037	Ig-like domain-containing protein. (212 aa)
	Atm	TAN domain-containing protein. (311 aa)
	ENSHCOP00000009485	Uncharacterized protein. (719 aa)
	LOC109530914	DnaJ heat shock protein family (Hsp40) member B9a. (211 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (946 aa)
	ENSHCOP00000028168	SEFIR domain-containing protein. (116 aa)
	bax	BCL2 associated X, apoptosis regulator a. (255 aa)
	ENSHCOP00000024683	Uncharacterized protein. (182 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	tnfsf13b	TNF superfamily member 13b; Belongs to the tumor necrosis factor family. (255 aa)
	ENSHCOP00000023902	SEFIR domain-containing protein. (110 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	LOC109512841	ENSHCOP00000009193	ENSHCOP00000007909	TAN domain-containing protein.	E1A binding protein p300 a.	0.407
Atm	LOC109514850	ENSHCOP00000009193	ENSHCOP00000024673	TAN domain-containing protein.	E1A binding protein p300 b.	0.407
Atm	msh2	ENSHCOP00000009193	ENSHCOP00000013100	TAN domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.769
ENSHCOP00000000810	card11	ENSHCOP00000000810	ENSHCOP00000020756	MALT paracaspase 2.	Caspase recruitment domain family, member 11.	0.916
ENSHCOP00000004798	ENSHCOP00000004818	ENSHCOP00000004798	ENSHCOP00000004818	PH domain-containing protein.	DHR-1 domain-containing protein; Belongs to the DOCK family.	0.921
ENSHCOP00000004818	ENSHCOP00000004798	ENSHCOP00000004818	ENSHCOP00000004798	DHR-1 domain-containing protein; Belongs to the DOCK family.	PH domain-containing protein.	0.921
ENSHCOP00000009485	ENSHCOP00000015116	ENSHCOP00000009485	ENSHCOP00000015116	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSHCOP00000015116	ENSHCOP00000009485	ENSHCOP00000015116	ENSHCOP00000009485	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSHCOP00000023902	Traf3ip2	ENSHCOP00000023902	ENSHCOP00000020697	SEFIR domain-containing protein.	SEFIR domain-containing protein.	0.902
ENSHCOP00000024683	LOC109513037	ENSHCOP00000024683	ENSHCOP00000009173	Uncharacterized protein.	Ig-like domain-containing protein.	0.689
ENSHCOP00000024683	cd79a	ENSHCOP00000024683	ENSHCOP00000023172	Uncharacterized protein.	CD79a molecule, immunoglobulin-associated alpha.	0.716
LOC109508060	bax	ENSHCOP00000020948	ENSHCOP00000026539	Zgc:153993.	BCL2 associated X, apoptosis regulator a.	0.988
LOC109511093	LOC109512841	ENSHCOP00000013752	ENSHCOP00000007909	BHLH domain-containing protein.	E1A binding protein p300 a.	0.452
LOC109511093	LOC109514850	ENSHCOP00000013752	ENSHCOP00000024673	BHLH domain-containing protein.	E1A binding protein p300 b.	0.452
LOC109511934	ptprc	ENSHCOP00000017368	ENSHCOP00000005914	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Protein tyrosine phosphatase receptor type C.	0.419
LOC109511934	tnfsf13b	ENSHCOP00000017368	ENSHCOP00000024110	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.825
LOC109512841	Atm	ENSHCOP00000007909	ENSHCOP00000009193	E1A binding protein p300 a.	TAN domain-containing protein.	0.407
LOC109512841	LOC109511093	ENSHCOP00000007909	ENSHCOP00000013752	E1A binding protein p300 a.	BHLH domain-containing protein.	0.452
LOC109512841	gps2	ENSHCOP00000007909	ENSHCOP00000006978	E1A binding protein p300 a.	G protein pathway suppressor 2.	0.442
LOC109513037	ENSHCOP00000024683	ENSHCOP00000009173	ENSHCOP00000024683	Ig-like domain-containing protein.	Uncharacterized protein.	0.689