23 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SP3	Sp3a transcription factor. (668 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109520468	SH3 domain-containing protein. (105 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	ENSHCOP00000018882	annotation not available (86 aa)
	LOC109511366	Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4). (125 aa)
	LOC109520596	Abl-interactor 1b. (390 aa)
	srf	Serum response factor b. (601 aa)
	LOC109517348	Sp3b transcription factor. (632 aa)
	ENSHCOP00000014594	SH2 domain-containing protein. (44 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (583 aa)
	ABI1	Abl-interactor 1a. (471 aa)
	SRF	Serum response factor. (344 aa)
	uba5	Ubiquitin-like modifier activating enzyme 5. (399 aa)
	ENSHCOP00000025036	Zinc finger protein, FOG family member 1. (1061 aa)
	ENSHCOP00000007741	SH2 domain-containing protein. (44 aa)
	ENSHCOP00000007099	annotation not available (72 aa)
	gp1bb	Glycoprotein Ib platelet subunit beta. (210 aa)
	sh2b3	SH2B adaptor protein 3. (671 aa)
	LOC109511800	Protein tyrosine phosphatase non-receptor type 11b. (558 aa)
	LOC109521629	GATA binding protein 1a. (416 aa)
	ENSHCOP00000002361	Glycoprotein IX (platelet). (262 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002361	ENSHCOP00000007099	ENSHCOP00000002361	ENSHCOP00000007099	Glycoprotein IX (platelet).	annotation not available	0.810
ENSHCOP00000002361	gp1bb	ENSHCOP00000002361	ENSHCOP00000004399	Glycoprotein IX (platelet).	Glycoprotein Ib platelet subunit beta.	0.960
ENSHCOP00000007099	ENSHCOP00000002361	ENSHCOP00000007099	ENSHCOP00000002361	annotation not available	Glycoprotein IX (platelet).	0.810
ENSHCOP00000018882	ENSHCOP00000025036	ENSHCOP00000018882	ENSHCOP00000025036	annotation not available	Zinc finger protein, FOG family member 1.	0.896
ENSHCOP00000018882	LOC109512841	ENSHCOP00000018882	ENSHCOP00000007909	annotation not available	E1A binding protein p300 a.	0.644
ENSHCOP00000018882	LOC109514850	ENSHCOP00000018882	ENSHCOP00000024673	annotation not available	E1A binding protein p300 b.	0.644
ENSHCOP00000018882	SP3	ENSHCOP00000018882	ENSHCOP00000008103	annotation not available	Sp3a transcription factor.	0.441
ENSHCOP00000025036	ENSHCOP00000018882	ENSHCOP00000025036	ENSHCOP00000018882	Zinc finger protein, FOG family member 1.	annotation not available	0.896
ENSHCOP00000025036	LOC109512841	ENSHCOP00000025036	ENSHCOP00000007909	Zinc finger protein, FOG family member 1.	E1A binding protein p300 a.	0.468
ENSHCOP00000025036	LOC109514850	ENSHCOP00000025036	ENSHCOP00000024673	Zinc finger protein, FOG family member 1.	E1A binding protein p300 b.	0.468
ENSHCOP00000025036	LOC109521629	ENSHCOP00000025036	ENSHCOP00000002614	Zinc finger protein, FOG family member 1.	GATA binding protein 1a.	0.896
LOC109511800	ptpn11	ENSHCOP00000002681	ENSHCOP00000019435	Protein tyrosine phosphatase non-receptor type 11b.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC109512841	ENSHCOP00000018882	ENSHCOP00000007909	ENSHCOP00000018882	E1A binding protein p300 a.	annotation not available	0.644
LOC109512841	ENSHCOP00000025036	ENSHCOP00000007909	ENSHCOP00000025036	E1A binding protein p300 a.	Zinc finger protein, FOG family member 1.	0.468
LOC109512841	LOC109521629	ENSHCOP00000007909	ENSHCOP00000002614	E1A binding protein p300 a.	GATA binding protein 1a.	0.644
LOC109514850	ENSHCOP00000018882	ENSHCOP00000024673	ENSHCOP00000018882	E1A binding protein p300 b.	annotation not available	0.644
LOC109514850	ENSHCOP00000025036	ENSHCOP00000024673	ENSHCOP00000025036	E1A binding protein p300 b.	Zinc finger protein, FOG family member 1.	0.468
LOC109514850	LOC109521629	ENSHCOP00000024673	ENSHCOP00000002614	E1A binding protein p300 b.	GATA binding protein 1a.	0.644
LOC109521629	ENSHCOP00000025036	ENSHCOP00000002614	ENSHCOP00000025036	GATA binding protein 1a.	Zinc finger protein, FOG family member 1.	0.896
LOC109521629	LOC109512841	ENSHCOP00000002614	ENSHCOP00000007909	GATA binding protein 1a.	E1A binding protein p300 a.	0.644