68 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHOB	Ras homolog family member B. (200 aa)
	llgl2	LLGL scribble cell polarity complex component 2. (949 aa)
	racgap1	Rac GTPase activating protein 1. (630 aa)
	ENSHCOP00000028435	Uncharacterized protein. (897 aa)
	ENSHCOP00000028417	Formin_GBD_N domain-containing protein. (62 aa)
	ENSHCOP00000028408	GBD/FH3 domain-containing protein. (147 aa)
	rab13	RAB13, member RAS oncogene family. (200 aa)
	ENSHCOP00000020611	Formin_GBD_N domain-containing protein. (108 aa)
	LLGL1	LLGL scribble cell polarity complex component 1. (541 aa)
	ENSHCOP00000020281	LLGL scribble cell polarity complex component 1. (323 aa)
	strip1	Striatin interacting protein 1. (800 aa)
	LOC109526527	Si:ch1073-416j23.1. (611 aa)
	akap11	A kinase (PRKA) anchor protein 11. (1786 aa)
	epb41	Erythrocyte membrane protein band 4.1a. (579 aa)
	ENSHCOP00000017463	FH2 domain-containing protein. (598 aa)
	LOC109507788	Uncharacterized protein. (193 aa)
	ENSHCOP00000016500	NCK-associated protein 1. (1024 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	fmnl3	Formin-like 3. (1088 aa)
	ENSHCOP00000010315	Uncharacterized protein. (71 aa)
	Fhod3	Formin homology 2 domain containing 3b. (615 aa)
	ENSHCOP00000009937	Uncharacterized protein. (145 aa)
	LOC109522655	Uncharacterized protein. (620 aa)
	Frmd3	Uncharacterized protein. (151 aa)
	LOC109511299	Uncharacterized protein. (192 aa)
	ppp2r3c	Protein phosphatase 2, regulatory subunit B'', gamma. (450 aa)
	LOC109509055	Uncharacterized protein. (95 aa)
	ENSHCOP00000007359	Uncharacterized protein. (101 aa)
	LOC109526314	FERM domain-containing protein. (711 aa)
	ENSHCOP00000005196	Uncharacterized protein. (179 aa)
	ENSHCOP00000005181	Formin homology 2 domain containing 1. (593 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	cdk5	Cyclin-dependent kinase 5. (258 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (788 aa)
	LOC109512466	Ras homolog family member Gb. (191 aa)
	ENSHCOP00000002991	ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family. (214 aa)
	ENSHCOP00000001889	Ras homolog gene family, member Gd. (156 aa)
	LOC109510395	Uncharacterized protein. (1036 aa)
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	fmnl2	Formin-like 2a. (996 aa)
	rhof	Ras homolog family member F. (211 aa)
	nckap1l	Uncharacterized protein. (1089 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	epb41l3	Erythrocyte membrane protein band 4.1-like 3b. (719 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	Anln	Anillin, actin binding protein. (914 aa)
	rock1	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1333 aa)
	LOC109519341	Rho family GTPase 2. (234 aa)
	LOC109509518	Erythrocyte membrane protein band 4.1 like 2. (957 aa)
	LOC109531368	Uncharacterized protein. (193 aa)
	LOC109526649	Si:dkey-178k16.1. (867 aa)
	LOC109530709	Rho related BTB domain containing 4. (734 aa)
	ENSHCOP00000027970	Uncharacterized protein. (42 aa)
	RND1	Rho family GTPase 1. (232 aa)
	LOC109515160	Uncharacterized protein. (192 aa)
	LOC109529292	Rac family small GTPase 3b. (124 aa)
	rhobtb2	Rho related BTB domain containing 2a. (689 aa)
	ENSHCOP00000026452	Uncharacterized protein. (282 aa)
	LOC109519306	Formin-like 1a. (916 aa)
	amotl2	Angiomotin like 2a. (624 aa)
	LOC109529475	Angiomotin like 2b. (681 aa)
	rhobtb3	Si:dkey-6b12.5. (420 aa)
	ENSHCOP00000023790	FERM domain-containing protein. (752 aa)
	ENSHCOP00000023720	FERM domain-containing protein. (81 aa)
	ENSHCOP00000023709	Formin_GBD_N domain-containing protein. (76 aa)
	ENSHCOP00000023696	FERM domain-containing protein. (702 aa)
	rock2	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1338 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	ENSHCOP00000002991	ENSHCOP00000016418	ENSHCOP00000002991	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.	0.900
Anln	ENSHCOP00000001889	ENSHCOP00000012242	ENSHCOP00000001889	Anillin, actin binding protein.	Ras homolog gene family, member Gd.	0.491
Anln	ENSHCOP00000010315	ENSHCOP00000012242	ENSHCOP00000010315	Anillin, actin binding protein.	Uncharacterized protein.	0.484
Anln	LOC109507788	ENSHCOP00000012242	ENSHCOP00000017424	Anillin, actin binding protein.	Uncharacterized protein.	0.758
Anln	LOC109509055	ENSHCOP00000012242	ENSHCOP00000007329	Anillin, actin binding protein.	Uncharacterized protein.	0.568
Anln	LOC109511299	ENSHCOP00000012242	ENSHCOP00000007629	Anillin, actin binding protein.	Uncharacterized protein.	0.506
Anln	LOC109511764	ENSHCOP00000012242	ENSHCOP00000005171	Anillin, actin binding protein.	Uncharacterized protein.	0.758
Anln	LOC109512466	ENSHCOP00000012242	ENSHCOP00000003073	Anillin, actin binding protein.	Ras homolog family member Gb.	0.491
Anln	LOC109515160	ENSHCOP00000012242	ENSHCOP00000026894	Anillin, actin binding protein.	Uncharacterized protein.	0.506
Anln	LOC109519341	ENSHCOP00000012242	ENSHCOP00000014479	Anillin, actin binding protein.	Rho family GTPase 2.	0.484
Anln	LOC109522387	ENSHCOP00000012242	ENSHCOP00000004882	Anillin, actin binding protein.	Uncharacterized protein.	0.758
Anln	LOC109522655	ENSHCOP00000012242	ENSHCOP00000009117	Anillin, actin binding protein.	Uncharacterized protein.	0.774
Anln	LOC109526527	ENSHCOP00000012242	ENSHCOP00000019340	Anillin, actin binding protein.	Si:ch1073-416j23.1.	0.774
Anln	LOC109528419	ENSHCOP00000012242	ENSHCOP00000001291	Anillin, actin binding protein.	Ras homolog gene family, member Aa.	0.758
Anln	LOC109529292	ENSHCOP00000012242	ENSHCOP00000026731	Anillin, actin binding protein.	Rac family small GTPase 3b.	0.506
Anln	LOC109530709	ENSHCOP00000012242	ENSHCOP00000016317	Anillin, actin binding protein.	Rho related BTB domain containing 4.	0.568
Anln	LOC109531368	ENSHCOP00000012242	ENSHCOP00000015776	Anillin, actin binding protein.	Uncharacterized protein.	0.758
Anln	RAC1	ENSHCOP00000012242	ENSHCOP00000011151	Anillin, actin binding protein.	Rac family small GTPase 1.	0.506
Anln	RHOB	ENSHCOP00000012242	ENSHCOP00000022445	Anillin, actin binding protein.	Ras homolog family member B.	0.758
Anln	RND1	ENSHCOP00000012242	ENSHCOP00000027435	Anillin, actin binding protein.	Rho family GTPase 1.	0.755