34 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109514211	Mothers against decapentaplegic homolog. (510 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ogt	O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1. (1050 aa)
	ENSHCOP00000016860	Uncharacterized protein. (199 aa)
	brca1	Uncharacterized protein. (1141 aa)
	mtf2	Metal response element binding transcription factor 2. (618 aa)
	LOC109514703	Mothers against decapentaplegic homolog. (503 aa)
	LOC109525307	PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily. (350 aa)
	chtop	Chromatin target of PRMT1a. (248 aa)
	rrp8	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (515 aa)
	ctr9	TPR_REGION domain-containing protein. (1169 aa)
	ENSHCOP00000002005	Fibrosin-like 1. (771 aa)
	phf20	PHD finger protein 20, a. (985 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	nsd3	Nuclear receptor binding SET domain protein 3. (1525 aa)
	ENSHCOP00000005461	Mothers against decapentaplegic homolog. (583 aa)
	auts2	Activator of transcription and developmental regulator AUTS2 a. (1283 aa)
	kansl2	KAT8 regulatory NSL complex subunit 2. (485 aa)
	rif1	Replication timing regulatory factor 1. (2634 aa)
	mecp2	Methyl CpG binding protein 2. (848 aa)
	dnmt1	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1485 aa)
	kansl1	KAT8 regulatory NSL complex subunit 1a. (1025 aa)
	ENSHCOP00000015108	PR domain containing 9. (757 aa)
	prdm12	PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily. (392 aa)
	myb	V-myb avian myeloblastosis viral oncogene homolog. (581 aa)
	LOC109512277	PHD finger protein 1. (379 aa)
	ENSHCOP00000028186	Mtf2_C domain-containing protein. (345 aa)
	mcrs1	Microspherule protein 1. (464 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (679 aa)
	jarid2	Jumonji, AT rich interactive domain 2b. (1258 aa)
	ENSHCOP00000026557	Lysine (K)-specific methyltransferase 2E. (434 aa)
	ENSHCOP00000023215	Uncharacterized protein. (106 aa)
	snw1	SNW domain containing 1. (536 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000016860	ENSHCOP00000028186	ENSHCOP00000016860	ENSHCOP00000028186	Uncharacterized protein.	Mtf2_C domain-containing protein.	0.903
ENSHCOP00000016860	dnmt1	ENSHCOP00000016860	ENSHCOP00000013439	Uncharacterized protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.441
ENSHCOP00000016860	jarid2	ENSHCOP00000016860	ENSHCOP00000027410	Uncharacterized protein.	Jumonji, AT rich interactive domain 2b.	0.829
ENSHCOP00000019285	ENSHCOP00000026557	ENSHCOP00000019285	ENSHCOP00000026557	Deacetylase sirtuin-type domain-containing protein.	Lysine (K)-specific methyltransferase 2E.	0.425
ENSHCOP00000019285	dnmt1	ENSHCOP00000019285	ENSHCOP00000013439	Deacetylase sirtuin-type domain-containing protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.461
ENSHCOP00000019285	rrp8	ENSHCOP00000019285	ENSHCOP00000000469	Deacetylase sirtuin-type domain-containing protein.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.741
ENSHCOP00000019306	ENSHCOP00000026557	ENSHCOP00000019306	ENSHCOP00000026557	Sirtuin 1.	Lysine (K)-specific methyltransferase 2E.	0.425
ENSHCOP00000019306	dnmt1	ENSHCOP00000019306	ENSHCOP00000013439	Sirtuin 1.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.461
ENSHCOP00000019306	rrp8	ENSHCOP00000019306	ENSHCOP00000000469	Sirtuin 1.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.741
ENSHCOP00000023215	kansl1	ENSHCOP00000023215	ENSHCOP00000014589	Uncharacterized protein.	KAT8 regulatory NSL complex subunit 1a.	0.852
ENSHCOP00000023215	kansl2	ENSHCOP00000023215	ENSHCOP00000012365	Uncharacterized protein.	KAT8 regulatory NSL complex subunit 2.	0.905
ENSHCOP00000023215	mcrs1	ENSHCOP00000023215	ENSHCOP00000027675	Uncharacterized protein.	Microspherule protein 1.	0.930
ENSHCOP00000023215	ogt	ENSHCOP00000023215	ENSHCOP00000018444	Uncharacterized protein.	O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.	0.721
ENSHCOP00000026557	ENSHCOP00000019285	ENSHCOP00000026557	ENSHCOP00000019285	Lysine (K)-specific methyltransferase 2E.	Deacetylase sirtuin-type domain-containing protein.	0.425
ENSHCOP00000026557	ENSHCOP00000019306	ENSHCOP00000026557	ENSHCOP00000019306	Lysine (K)-specific methyltransferase 2E.	Sirtuin 1.	0.425
ENSHCOP00000026557	LOC109523155	ENSHCOP00000026557	ENSHCOP00000003219	Lysine (K)-specific methyltransferase 2E.	Sirtuin 1.	0.425
ENSHCOP00000026557	kansl2	ENSHCOP00000026557	ENSHCOP00000012365	Lysine (K)-specific methyltransferase 2E.	KAT8 regulatory NSL complex subunit 2.	0.797
ENSHCOP00000026557	mcrs1	ENSHCOP00000026557	ENSHCOP00000027675	Lysine (K)-specific methyltransferase 2E.	Microspherule protein 1.	0.847
ENSHCOP00000026557	nsd3	ENSHCOP00000026557	ENSHCOP00000004572	Lysine (K)-specific methyltransferase 2E.	Nuclear receptor binding SET domain protein 3.	0.500
ENSHCOP00000026557	ogt	ENSHCOP00000026557	ENSHCOP00000018444	Lysine (K)-specific methyltransferase 2E.	O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.	0.657