9 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109508979	Thyroglobulin type-1 domain-containing protein. (92 aa)
	LOC109523153	Insulin-like growth factor binding protein 6b. (202 aa)
	IGFBP3	Insulin like growth factor binding protein 3. (290 aa)
	LOC109515444	Insulin-like growth factor binding protein 5a. (268 aa)
	LOC109522365	Uncharacterized protein. (187 aa)
	igfbp2	Insulin-like growth factor binding protein 2a. (284 aa)
	igfbp5	Insulin-like growth factor binding protein 5a. (256 aa)
	IGFBP4	Insulin like growth factor binding protein 4. (261 aa)
	LOC109524696	Insulin-like growth factor binding protein 3. (357 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IGFBP3	LOC109524696	ENSHCOP00000016803	ENSHCOP00000006382	Insulin like growth factor binding protein 3.	Insulin-like growth factor binding protein 3.	0.902
LOC109508979	LOC109522365	ENSHCOP00000007456	ENSHCOP00000027750	Thyroglobulin type-1 domain-containing protein.	Uncharacterized protein.	0.585
LOC109508979	LOC109523153	ENSHCOP00000007456	ENSHCOP00000012170	Thyroglobulin type-1 domain-containing protein.	Insulin-like growth factor binding protein 6b.	0.621
LOC109522365	LOC109508979	ENSHCOP00000027750	ENSHCOP00000007456	Uncharacterized protein.	Thyroglobulin type-1 domain-containing protein.	0.585
LOC109523153	LOC109508979	ENSHCOP00000012170	ENSHCOP00000007456	Insulin-like growth factor binding protein 6b.	Thyroglobulin type-1 domain-containing protein.	0.621
LOC109524696	IGFBP3	ENSHCOP00000006382	ENSHCOP00000016803	Insulin-like growth factor binding protein 3.	Insulin like growth factor binding protein 3.	0.902