53 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	slitrk6	SLIT and NTRK-like family, member 6. (844 aa)
	ercc6	Excision repair cross-complementation group 6. (1377 aa)
	LOC109526027	Amino acid transporter. (527 aa)
	ENSHCOP00000027369	Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b. (203 aa)
	ccdc151	Coiled-coil domain containing 151. (461 aa)
	LOC109520778	Sphingomyelin phosphodiesterase 3, neutral. (626 aa)
	pkdcc	Protein kinase domain containing, cytoplasmic b. (505 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (808 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	SLITRK1	SLIT and NTRK like family member 1. (707 aa)
	LOC109510543	Selenoprotein M. (157 aa)
	en1	Homeobox protein engrailed-like. (281 aa)
	ENSHCOP00000021557	DWNN domain-containing protein. (156 aa)
	xrcc2	Rad51 domain-containing protein. (353 aa)
	LOC109511682	Tensin 2a. (1329 aa)
	stk40	Serine/threonine kinase 40. (440 aa)
	atrx	ATRX chromatin remodeler. (1645 aa)
	ankrd11	Ankyrin repeat domain 11. (2825 aa)
	ENSHCOP00000017565	Uncharacterized protein. (198 aa)
	fkbp8	Peptidylprolyl isomerase. (394 aa)
	LOC109525205	T-cell acute lymphocytic leukemia 2. (117 aa)
	UNC79	Unc-79 homolog, NALCN channel complex subunit. (2407 aa)
	ENSHCOP00000014771	Uncharacterized protein. (199 aa)
	kdm6a	Lysine (K)-specific demethylase 6A. (1205 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (188 aa)
	ercc1	Excision repair cross-complementation group 1. (338 aa)
	ENSHCOP00000012585	Uncharacterized protein. (208 aa)
	ENSHCOP00000012576	DWNN domain-containing protein. (68 aa)
	ercc2	Excision repair cross-complementation group 2. (591 aa)
	LOC109510908	Activating transcription factor 5b. (502 aa)
	sp2	Sp2 transcription factor. (861 aa)
	ttc8	Tetratricopeptide repeat domain 8. (511 aa)
	LOC109517076	Ring finger and CCCH-type domains 2. (1123 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2512 aa)
	LOC109524475	Uncharacterized protein. (661 aa)
	wdr11	WD repeat domain 11. (1195 aa)
	LOC109527079	Amyloid beta (A4) precursor protein-binding, family A, member 1b. (860 aa)
	LOC109512439	Activating transcription factor 5a. (494 aa)
	tmed2	Transmembrane p24 trafficking protein 2. (201 aa)
	wdtc1	WD and tetratricopeptide repeats 1. (656 aa)
	ENSHCOP00000005103	Uncharacterized protein. (167 aa)
	AR	Androgen receptor. (703 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (471 aa)
	LOC109527759	Amino acid transporter. (658 aa)
	LOC109514440	Amyloid beta (A4) precursor protein-binding, family A, member 2b. (801 aa)
	slc1a2	Solute carrier family 1 member 2b. (551 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	palb2	PALB2_WD40 domain-containing protein. (1012 aa)
	LOC109520893	Lysine (K)-specific demethylase 6A, like. (1335 aa)
	Atm	TAN domain-containing protein. (311 aa)
	ENSHCOP00000009180	Uncharacterized protein. (169 aa)
	LOC109522925	FKBP prolyl isomerase 16. (358 aa)
	Ankrd12	ANK_REP_REGION domain-containing protein. (427 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	LOC109512841	ENSHCOP00000005587	ENSHCOP00000007909	Androgen receptor.	E1A binding protein p300 a.	0.610
AR	LOC109514850	ENSHCOP00000005587	ENSHCOP00000024673	Androgen receptor.	E1A binding protein p300 b.	0.610
AR	LOC109524475	ENSHCOP00000005587	ENSHCOP00000002512	Androgen receptor.	Uncharacterized protein.	0.906
Ankrd12	Atm	ENSHCOP00000010363	ENSHCOP00000009193	ANK_REP_REGION domain-containing protein.	TAN domain-containing protein.	0.506
Ankrd12	ENSHCOP00000009180	ENSHCOP00000010363	ENSHCOP00000009180	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.506
Ankrd12	palb2	ENSHCOP00000010363	ENSHCOP00000009033	ANK_REP_REGION domain-containing protein.	PALB2_WD40 domain-containing protein.	0.578
Ankrd12	xrcc2	ENSHCOP00000010363	ENSHCOP00000021453	ANK_REP_REGION domain-containing protein.	Rad51 domain-containing protein.	0.549
Atm	Ankrd12	ENSHCOP00000009193	ENSHCOP00000010363	TAN domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.506
Atm	ENSHCOP00000005103	ENSHCOP00000009193	ENSHCOP00000005103	TAN domain-containing protein.	Uncharacterized protein.	0.507
Atm	ENSHCOP00000009180	ENSHCOP00000009193	ENSHCOP00000009180	TAN domain-containing protein.	Uncharacterized protein.	0.929
Atm	LOC109512841	ENSHCOP00000009193	ENSHCOP00000007909	TAN domain-containing protein.	E1A binding protein p300 a.	0.407
Atm	LOC109514850	ENSHCOP00000009193	ENSHCOP00000024673	TAN domain-containing protein.	E1A binding protein p300 b.	0.407
Atm	ankrd11	ENSHCOP00000009193	ENSHCOP00000019453	TAN domain-containing protein.	Ankyrin repeat domain 11.	0.506
Atm	atrx	ENSHCOP00000009193	ENSHCOP00000019999	TAN domain-containing protein.	ATRX chromatin remodeler.	0.507
Atm	ercc1	ENSHCOP00000009193	ENSHCOP00000014052	TAN domain-containing protein.	Excision repair cross-complementation group 1.	0.616
Atm	ercc2	ENSHCOP00000009193	ENSHCOP00000012363	TAN domain-containing protein.	Excision repair cross-complementation group 2.	0.682
Atm	mtor	ENSHCOP00000009193	ENSHCOP00000002338	TAN domain-containing protein.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.527
Atm	palb2	ENSHCOP00000009193	ENSHCOP00000009033	TAN domain-containing protein.	PALB2_WD40 domain-containing protein.	0.813
Atm	xrcc2	ENSHCOP00000009193	ENSHCOP00000021453	TAN domain-containing protein.	Rad51 domain-containing protein.	0.714
ENSHCOP00000005103	Atm	ENSHCOP00000005103	ENSHCOP00000009193	Uncharacterized protein.	TAN domain-containing protein.	0.507