(22 nodes) Monoubiquitinated protein deubiquitination network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (554 aa)
	trrap	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (3534 aa)
	usp47	Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family. (1363 aa)
	ENSHCOP00000001726	Uncharacterized protein. (267 aa)
	TADA1	Transcriptional adaptor 1. (343 aa)
	bap1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase). (679 aa)
	supt7l	SPT7 like, STAGA complex gamma subunit. (426 aa)
	LOC109509128	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (601 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (747 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (188 aa)
	sgf29	SAGA complex associated factor 29. (315 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1111 aa)
	usp1	Ubiquitin carboxyl-terminal hydrolase. (771 aa)
	taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
	atxn7l2	Ataxin 7-like 2a. (782 aa)
	ENSHCOP00000021626	Uncharacterized protein. (136 aa)
	atxn7	Ataxin 7. (955 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (189 aa)
	LOC109509962	Splicing factor 3B subunit 5. (86 aa)
	mysm1	Myb-like, SWIRM and MPN domains 1. (715 aa)
	supt3h	Uncharacterized protein. (340 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000001726	ENSHCOP00000021626	ENSHCOP00000001726	ENSHCOP00000021626	Uncharacterized protein.	Uncharacterized protein.	0.867
ENSHCOP00000001726	LOC109509128	ENSHCOP00000001726	ENSHCOP00000007180	Uncharacterized protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.685
ENSHCOP00000001726	LOC109509962	ENSHCOP00000001726	ENSHCOP00000026132	Uncharacterized protein.	Splicing factor 3B subunit 5.	0.685
ENSHCOP00000001726	TADA1	ENSHCOP00000001726	ENSHCOP00000003927	Uncharacterized protein.	Transcriptional adaptor 1.	0.906
ENSHCOP00000001726	atxn7	ENSHCOP00000001726	ENSHCOP00000024515	Uncharacterized protein.	Ataxin 7.	0.867
ENSHCOP00000001726	atxn7l2	ENSHCOP00000001726	ENSHCOP00000019470	Uncharacterized protein.	Ataxin 7-like 2a.	0.867
ENSHCOP00000001726	sgf29	ENSHCOP00000001726	ENSHCOP00000017882	Uncharacterized protein.	SAGA complex associated factor 29.	0.961
ENSHCOP00000001726	supt3h	ENSHCOP00000001726	ENSHCOP00000028138	Uncharacterized protein.	Uncharacterized protein.	0.959
ENSHCOP00000001726	supt7l	ENSHCOP00000001726	ENSHCOP00000006633	Uncharacterized protein.	SPT7 like, STAGA complex gamma subunit.	0.945
ENSHCOP00000001726	taf10	ENSHCOP00000001726	ENSHCOP00000014098	Uncharacterized protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.974
ENSHCOP00000001726	taf12	ENSHCOP00000001726	ENSHCOP00000025500	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.961
ENSHCOP00000001726	taf5	ENSHCOP00000001726	ENSHCOP00000012918	Uncharacterized protein.	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.909
ENSHCOP00000001726	taf5l	ENSHCOP00000001726	ENSHCOP00000028421	Uncharacterized protein.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.909
ENSHCOP00000001726	taf6	ENSHCOP00000001726	ENSHCOP00000019381	Uncharacterized protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.953
ENSHCOP00000001726	taf6l	ENSHCOP00000001726	ENSHCOP00000008081	Uncharacterized protein.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.938
ENSHCOP00000001726	trrap	ENSHCOP00000001726	ENSHCOP00000001677	Uncharacterized protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.929
ENSHCOP00000021626	ENSHCOP00000001726	ENSHCOP00000021626	ENSHCOP00000001726	Uncharacterized protein.	Uncharacterized protein.	0.867
ENSHCOP00000021626	LOC109509128	ENSHCOP00000021626	ENSHCOP00000007180	Uncharacterized protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.490
ENSHCOP00000021626	LOC109509962	ENSHCOP00000021626	ENSHCOP00000026132	Uncharacterized protein.	Splicing factor 3B subunit 5.	0.490
ENSHCOP00000021626	TADA1	ENSHCOP00000021626	ENSHCOP00000003927	Uncharacterized protein.	Transcriptional adaptor 1.	0.578