52 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hspa5	Heat shock protein 5; Belongs to the heat shock protein 70 family. (650 aa)
	SZT2	SZT2 subunit of KICSTOR complex. (2308 aa)
	LOC109520914	Protein kinase, AMP-activated, gamma 3a non-catalytic subunit. (317 aa)
	LOC109530428	Protein kinase domain-containing protein. (716 aa)
	kptn	Kaptin (actin binding protein). (440 aa)
	ENSHCOP00000015050	Uncharacterized protein. (309 aa)
	LOC109519277	Protein kinase, AMP-activated, gamma 3b non-catalytic subunit. (410 aa)
	ENSHCOP00000018012	Protein kinase domain-containing protein. (340 aa)
	tbl2	Transducin (beta)-like 2. (442 aa)
	LOC109531921	Protein kinase domain-containing protein. (394 aa)
	cpeb4	Cytoplasmic polyadenylation element binding protein 4a. (737 aa)
	LOC109521327	Protein kinase, AMP-activated, gamma 2 non-catalytic subunit b. (542 aa)
	zc3h12a	Si:dkey-206d17.12. (517 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	pick1	Protein interacting with prkca 1. (413 aa)
	sik2	Salt-inducible kinase 2b. (936 aa)
	prkaa1	Non-specific serine/threonine protein kinase. (569 aa)
	nuak2	NUAK family, SNF1-like kinase, 2. (621 aa)
	Cunh12orf66	Si:ch211-125a15.1. (452 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	prkag1	Protein kinase, AMP-activated, gamma 1 non-catalytic subunit. (330 aa)
	LOC109516662	Si:zfos-80g12.1. (445 aa)
	ENSHCOP00000002506	BCL2 apoptosis regulator b. (225 aa)
	ENSHCOP00000002481	BCL2 apoptosis regulator b. (221 aa)
	bhlha15	Basic helix-loop-helix family, member a15. (188 aa)
	ENSHCOP00000027057	Uncharacterized protein. (169 aa)
	LOC109509805	Sestrin 2. (548 aa)
	prkaa2	Non-specific serine/threonine protein kinase. (548 aa)
	impact	Impact RWD domain protein. (312 aa)
	LOC109531237	Protein kinase domain-containing protein. (677 aa)
	xbp1	X-box binding protein 1. (262 aa)
	pik3r4	Phosphoinositide-3-kinase, regulatory subunit 4. (1148 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (725 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (598 aa)
	nuak1	NUAK family, SNF1-like kinase, 1b. (648 aa)
	ENSHCOP00000001391	Uncharacterized protein. (130 aa)
	ENSHCOP00000001389	Uncharacterized protein. (115 aa)
	ENSHCOP00000001323	Protein kinase domain-containing protein. (203 aa)
	LOC109528525	Si:ch211-117c9.1. (641 aa)
	rrp8	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (515 aa)
	atg14	Autophagy related 14. (503 aa)
	LOC109506921	Si:dkey-16p21.7. (703 aa)
	ENSHCOP00000014996	Uncharacterized protein. (113 aa)
	itfg2	Integrin alpha FG-GAP repeat containing 2. (418 aa)
	sesn1	Sestrin 1. (552 aa)
	Nim1k	NIM1 serine/threonine protein kinase; Belongs to the protein kinase superfamily. (274 aa)
	LOC109524683	Salt-inducible kinase 1. (798 aa)
	eif2ak3	Eukaryotic translation initiation factor 2-alpha kinase 3. (1106 aa)
	LOC109523941	Si:ch211-22d5.2; Belongs to the protein kinase superfamily. (420 aa)
	ENSHCOP00000008901	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family. (161 aa)
	ENSHCOP00000008635	Uncharacterized protein. (245 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cunh12orf66	ENSHCOP00000014996	ENSHCOP00000003919	ENSHCOP00000014996	Si:ch211-125a15.1.	Uncharacterized protein.	0.939
Cunh12orf66	LOC109509805	ENSHCOP00000003919	ENSHCOP00000026841	Si:ch211-125a15.1.	Sestrin 2.	0.502
Cunh12orf66	SZT2	ENSHCOP00000003919	ENSHCOP00000008569	Si:ch211-125a15.1.	SZT2 subunit of KICSTOR complex.	0.990
Cunh12orf66	itfg2	ENSHCOP00000003919	ENSHCOP00000015001	Si:ch211-125a15.1.	Integrin alpha FG-GAP repeat containing 2.	0.991
Cunh12orf66	kptn	ENSHCOP00000003919	ENSHCOP00000006525	Si:ch211-125a15.1.	Kaptin (actin binding protein).	0.992
Cunh12orf66	sesn1	ENSHCOP00000003919	ENSHCOP00000011214	Si:ch211-125a15.1.	Sestrin 1.	0.502
ENSHCOP00000001323	LOC109519277	ENSHCOP00000001323	ENSHCOP00000016124	Protein kinase domain-containing protein.	Protein kinase, AMP-activated, gamma 3b non-catalytic subunit.	0.535
ENSHCOP00000001323	LOC109520914	ENSHCOP00000001323	ENSHCOP00000007849	Protein kinase domain-containing protein.	Protein kinase, AMP-activated, gamma 3a non-catalytic subunit.	0.535
ENSHCOP00000001323	LOC109521327	ENSHCOP00000001323	ENSHCOP00000018841	Protein kinase domain-containing protein.	Protein kinase, AMP-activated, gamma 2 non-catalytic subunit b.	0.535
ENSHCOP00000001323	pik3r4	ENSHCOP00000001323	ENSHCOP00000023753	Protein kinase domain-containing protein.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.413
ENSHCOP00000001323	prkag1	ENSHCOP00000001323	ENSHCOP00000002529	Protein kinase domain-containing protein.	Protein kinase, AMP-activated, gamma 1 non-catalytic subunit.	0.535
ENSHCOP00000001389	LOC109519277	ENSHCOP00000001389	ENSHCOP00000016124	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 3b non-catalytic subunit.	0.535
ENSHCOP00000001389	LOC109520914	ENSHCOP00000001389	ENSHCOP00000007849	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 3a non-catalytic subunit.	0.535
ENSHCOP00000001389	LOC109521327	ENSHCOP00000001389	ENSHCOP00000018841	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 2 non-catalytic subunit b.	0.535
ENSHCOP00000001389	pik3r4	ENSHCOP00000001389	ENSHCOP00000023753	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.413
ENSHCOP00000001389	prkag1	ENSHCOP00000001389	ENSHCOP00000002529	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 1 non-catalytic subunit.	0.535
ENSHCOP00000001391	LOC109519277	ENSHCOP00000001391	ENSHCOP00000016124	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 3b non-catalytic subunit.	0.535
ENSHCOP00000001391	LOC109520914	ENSHCOP00000001391	ENSHCOP00000007849	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 3a non-catalytic subunit.	0.535
ENSHCOP00000001391	LOC109521327	ENSHCOP00000001391	ENSHCOP00000018841	Uncharacterized protein.	Protein kinase, AMP-activated, gamma 2 non-catalytic subunit b.	0.535
ENSHCOP00000001391	pik3r4	ENSHCOP00000001391	ENSHCOP00000023753	Uncharacterized protein.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.413