28 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ash1l	Uncharacterized protein. (1859 aa)
	ppm1a	Protein phosphatase, Mg2+/Mn2+ dependent, 1Aa. (384 aa)
	LOC109509327	Uncharacterized protein. (154 aa)
	LOC109509577	Uncharacterized protein. (194 aa)
	nlrx1	NLR family member X1. (968 aa)
	LOC109526436	Protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative). (445 aa)
	tnip1	TNFAIP3 interacting protein 1. (670 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	zc3h12a	Si:dkey-206d17.12. (517 aa)
	LOC109517754	Nuclear receptor subfamily 1, group H, member 5. (488 aa)
	LOC109531321	Nuclear receptor subfamily 1, group D, member 4a. (571 aa)
	LOC109518553	Protein kinase domain-containing protein. (796 aa)
	ENSHCOP00000013487	Uncharacterized protein. (93 aa)
	ENSHCOP00000013471	TBD domain-containing protein. (231 aa)
	LOC109530175	Protein phosphatase, Mg2+/Mn2+ dependent, 1Bb. (474 aa)
	otud7a	OTU deubiquitinase 7A. (945 aa)
	zmynd11	Zinc finger, MYND-type containing 11. (705 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (476 aa)
	LOC109512256	OTU deubiquitinase 7B. (831 aa)
	ENSHCOP00000007769	Uncharacterized protein. (76 aa)
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (517 aa)
	LOC109513128	Ash1 (absent, small, or homeotic)-like (Drosophila). (2930 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (871 aa)
	LOC109520533	Uncharacterized protein; Belongs to the peptidase C14A family. (492 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (753 aa)
	ppm1b	Protein phosphatase, Mg2+/Mn2+ dependent, 1Ba. (402 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000013471	LOC109518553	ENSHCOP00000013471	ENSHCOP00000014493	TBD domain-containing protein.	Protein kinase domain-containing protein.	0.445
ENSHCOP00000013471	zc3h12a	ENSHCOP00000013471	ENSHCOP00000019147	TBD domain-containing protein.	Si:dkey-206d17.12.	0.498
ENSHCOP00000013487	LOC109518553	ENSHCOP00000013487	ENSHCOP00000014493	Uncharacterized protein.	Protein kinase domain-containing protein.	0.445
ENSHCOP00000013487	zc3h12a	ENSHCOP00000013487	ENSHCOP00000019147	Uncharacterized protein.	Si:dkey-206d17.12.	0.498
LOC109509327	zc3h12a	ENSHCOP00000027742	ENSHCOP00000019147	Uncharacterized protein.	Si:dkey-206d17.12.	0.417
LOC109509577	LOC109518553	ENSHCOP00000027303	ENSHCOP00000014493	Uncharacterized protein.	Protein kinase domain-containing protein.	0.445
LOC109509577	zc3h12a	ENSHCOP00000027303	ENSHCOP00000019147	Uncharacterized protein.	Si:dkey-206d17.12.	0.498
LOC109512256	tnfaip3	ENSHCOP00000007939	ENSHCOP00000001357	OTU deubiquitinase 7B.	Tumor necrosis factor, alpha-induced protein 3.	0.423
LOC109512256	tnip1	ENSHCOP00000007939	ENSHCOP00000020252	OTU deubiquitinase 7B.	TNFAIP3 interacting protein 1.	0.655
LOC109518553	ENSHCOP00000013471	ENSHCOP00000014493	ENSHCOP00000013471	Protein kinase domain-containing protein.	TBD domain-containing protein.	0.445
LOC109518553	ENSHCOP00000013487	ENSHCOP00000014493	ENSHCOP00000013487	Protein kinase domain-containing protein.	Uncharacterized protein.	0.445
LOC109518553	LOC109509577	ENSHCOP00000014493	ENSHCOP00000027303	Protein kinase domain-containing protein.	Uncharacterized protein.	0.445
LOC109518553	nlrx1	ENSHCOP00000014493	ENSHCOP00000023729	Protein kinase domain-containing protein.	NLR family member X1.	0.571
LOC109518553	tnfaip3	ENSHCOP00000014493	ENSHCOP00000001357	Protein kinase domain-containing protein.	Tumor necrosis factor, alpha-induced protein 3.	0.545
LOC109520533	zc3h12a	ENSHCOP00000001852	ENSHCOP00000019147	Uncharacterized protein; Belongs to the peptidase C14A family.	Si:dkey-206d17.12.	0.417
LOC109526436	ppm1a	ENSHCOP00000020690	ENSHCOP00000028394	Protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative).	Protein phosphatase, Mg2+/Mn2+ dependent, 1Aa.	0.902
LOC109530175	ppm1b	ENSHCOP00000013258	ENSHCOP00000001169	Protein phosphatase, Mg2+/Mn2+ dependent, 1Bb.	Protein phosphatase, Mg2+/Mn2+ dependent, 1Ba.	0.901
nlrx1	LOC109518553	ENSHCOP00000023729	ENSHCOP00000014493	NLR family member X1.	Protein kinase domain-containing protein.	0.571
otud7a	tnfaip3	ENSHCOP00000010134	ENSHCOP00000001357	OTU deubiquitinase 7A.	Tumor necrosis factor, alpha-induced protein 3.	0.422
otud7a	tnip1	ENSHCOP00000010134	ENSHCOP00000020252	OTU deubiquitinase 7A.	TNFAIP3 interacting protein 1.	0.655