19 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	axin1	Axin 1. (786 aa)
	map3k13	Mitogen-activated protein kinase kinase kinase. (990 aa)
	LOC109517234	Uncharacterized protein. (775 aa)
	ern1	Endoplasmic reticulum to nucleus signaling 1. (1053 aa)
	fzd4	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family. (531 aa)
	ENSHCOP00000010147	Endothelin 1. (182 aa)
	LOC109528765	Dickkopf WNT signaling pathway inhibitor 1a. (249 aa)
	tnfrsf11a	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator. (595 aa)
	LOC109518923	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (590 aa)
	ENSHCOP00000006922	SCY domain-containing protein. (117 aa)
	LOC109511398	Uncharacterized protein. (887 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (568 aa)
	sash1	SAM and SH3 domain containing 1a. (1177 aa)
	LOC109511384	Endoplasmic reticulum to nucleus signaling 2. (920 aa)
	LOC109529256	Protein kinase domain-containing protein. (503 aa)
	map3k4	Mitogen-activated protein kinase kinase kinase 4. (1500 aa)
	fzd8	Frizzled class receptor 8a; Belongs to the G-protein coupled receptor Fz/Smo family. (583 aa)
	dusp19	Dual specificity phosphatase 19b. (193 aa)
	map2k7	Mitogen-activated protein kinase kinase 7. (422 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109528765	fzd4	ENSHCOP00000009315	ENSHCOP00000012037	Dickkopf WNT signaling pathway inhibitor 1a.	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family.	0.407
LOC109529256	map2k7	ENSHCOP00000027300	ENSHCOP00000015569	Protein kinase domain-containing protein.	Mitogen-activated protein kinase kinase 7.	0.972
dusp19	map2k7	ENSHCOP00000016492	ENSHCOP00000015569	Dual specificity phosphatase 19b.	Mitogen-activated protein kinase kinase 7.	0.667
fzd4	LOC109528765	ENSHCOP00000012037	ENSHCOP00000009315	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family.	Dickkopf WNT signaling pathway inhibitor 1a.	0.407
map2k7	LOC109529256	ENSHCOP00000015569	ENSHCOP00000027300	Mitogen-activated protein kinase kinase 7.	Protein kinase domain-containing protein.	0.972
map2k7	dusp19	ENSHCOP00000015569	ENSHCOP00000016492	Mitogen-activated protein kinase kinase 7.	Dual specificity phosphatase 19b.	0.667
map2k7	map3k13	ENSHCOP00000015569	ENSHCOP00000014308	Mitogen-activated protein kinase kinase 7.	Mitogen-activated protein kinase kinase kinase.	0.928
map2k7	map3k7	ENSHCOP00000015569	ENSHCOP00000015445	Mitogen-activated protein kinase kinase 7.	Mitogen-activated protein kinase kinase kinase 7.	0.732
map3k13	map2k7	ENSHCOP00000014308	ENSHCOP00000015569	Mitogen-activated protein kinase kinase kinase.	Mitogen-activated protein kinase kinase 7.	0.928
map3k7	map2k7	ENSHCOP00000015445	ENSHCOP00000015569	Mitogen-activated protein kinase kinase kinase 7.	Mitogen-activated protein kinase kinase 7.	0.732