26 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	LOC109509807	Fibroblast growth factor binding protein 1b. (204 aa)
	LOC109518807	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family. (205 aa)
	LOC109524113	Uncharacterized protein. (1303 aa)
	hspb1	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family. (201 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (598 aa)
	igf2	Insulin-like growth factor 2b. (216 aa)
	LOC109531720	ADAM metallopeptidase domain 17b. (805 aa)
	ENSHCOP00000020575	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (216 aa)
	LOC109527064	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (495 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	LOC109520436	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (526 aa)
	vegfc	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family. (393 aa)
	LOC109520254	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (445 aa)
	LOC109510758	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	ywhaq	ADAM metallopeptidase domain 17a. (883 aa)
	atp5f1b	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (517 aa)
	ENSHCOP00000007590	Fibroblast growth factor binding protein 1b. (204 aa)
	ENSHCOP00000006858	ATP-synt_ab_N domain-containing protein. (163 aa)
	LOC109513557	CD40 molecule, TNF receptor superfamily member 5. (309 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	fgf2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (159 aa)
	ENSHCOP00000002689	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (201 aa)
	LOC109511462	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (471 aa)
	sp1	Sp1 transcription factor. (523 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002689	ENSHCOP00000007590	ENSHCOP00000002689	ENSHCOP00000007590	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor binding protein 1b.	0.457
ENSHCOP00000002689	LOC109509807	ENSHCOP00000002689	ENSHCOP00000026393	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor binding protein 1b.	0.457
ENSHCOP00000006858	LOC109520436	ENSHCOP00000006858	ENSHCOP00000018469	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.982
ENSHCOP00000006858	LOC109527064	ENSHCOP00000006858	ENSHCOP00000019846	ATP-synt_ab_N domain-containing protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.982
ENSHCOP00000007590	ENSHCOP00000002689	ENSHCOP00000007590	ENSHCOP00000002689	Fibroblast growth factor binding protein 1b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.457
ENSHCOP00000007590	LOC109518807	ENSHCOP00000007590	ENSHCOP00000024827	Fibroblast growth factor binding protein 1b.	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	0.457
ENSHCOP00000020575	fgf2	ENSHCOP00000020575	ENSHCOP00000002815	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.420
LOC109509807	ENSHCOP00000002689	ENSHCOP00000026393	ENSHCOP00000002689	Fibroblast growth factor binding protein 1b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.457
LOC109509807	LOC109518807	ENSHCOP00000026393	ENSHCOP00000024827	Fibroblast growth factor binding protein 1b.	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	0.457
LOC109510758	fgf2	ENSHCOP00000014894	ENSHCOP00000002815	Transforming growth factor beta; Belongs to the TGF-beta family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.602
LOC109511462	fgf2	ENSHCOP00000002473	ENSHCOP00000002815	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.420
LOC109511462	vegfc	ENSHCOP00000002473	ENSHCOP00000017677	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.	Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.	0.924
LOC109518807	ENSHCOP00000007590	ENSHCOP00000024827	ENSHCOP00000007590	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor binding protein 1b.	0.457
LOC109518807	LOC109509807	ENSHCOP00000024827	ENSHCOP00000026393	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor binding protein 1b.	0.457
LOC109520254	LOC109520436	ENSHCOP00000015073	ENSHCOP00000018469	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.987
LOC109520254	LOC109527064	ENSHCOP00000015073	ENSHCOP00000019846	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.987
LOC109520254	atp5f1b	ENSHCOP00000015073	ENSHCOP00000010305	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC109520436	ENSHCOP00000006858	ENSHCOP00000018469	ENSHCOP00000006858	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_ab_N domain-containing protein.	0.982
LOC109520436	LOC109520254	ENSHCOP00000018469	ENSHCOP00000015073	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.987
LOC109520436	LOC109527064	ENSHCOP00000018469	ENSHCOP00000019846	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900