22 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hsp90ab1	Heat shock protein 90, alpha (cytosolic), class B member 1. (723 aa)
	AR	Androgen receptor. (703 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	TNFRSF11B	TNF receptor superfamily member 11b. (391 aa)
	rbbp5	Retinoblastoma binding protein 5. (558 aa)
	ENSHCOP00000010844	Uncharacterized protein. (48 aa)
	LOC109529888	Hemopexin a. (427 aa)
	LOC109521987	Vitellogenin 3, phosvitinless. (1237 aa)
	cited1	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1. (168 aa)
	brca1	Uncharacterized protein. (1141 aa)
	ENSHCOP00000017975	AT rich interactive domain 5A (MRF1-like). (514 aa)
	pelp1	Proline, glutamate and leucine rich protein 1. (1212 aa)
	bcas3	BCAS3 microtubule associated cell migration factor. (700 aa)
	LOC109525874	Uncharacterized protein. (323 aa)
	ENSHCOP00000021315	Osteoclast stimulatory transmembrane protein. (408 aa)
	LOC109529261	Corticotropin releasing hormone binding protein. (266 aa)
	sra1	SRA1 domain-containing protein. (225 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109522770	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b. (246 aa)
	ash2l	Ash2 like, histone lysine methyltransferase complex subunit. (595 aa)
	LOC109524475	Uncharacterized protein. (661 aa)
	ENSHCOP00000003011	Zinc finger protein 366. (602 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	LOC109512841	ENSHCOP00000005587	ENSHCOP00000007909	Androgen receptor.	E1A binding protein p300 a.	0.610
AR	LOC109514850	ENSHCOP00000005587	ENSHCOP00000024673	Androgen receptor.	E1A binding protein p300 b.	0.610
AR	LOC109524475	ENSHCOP00000005587	ENSHCOP00000002512	Androgen receptor.	Uncharacterized protein.	0.906
AR	brca1	ENSHCOP00000005587	ENSHCOP00000016663	Androgen receptor.	Uncharacterized protein.	0.497
AR	hsp90ab1	ENSHCOP00000005587	ENSHCOP00000003821	Androgen receptor.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.672
LOC109512841	AR	ENSHCOP00000007909	ENSHCOP00000005587	E1A binding protein p300 a.	Androgen receptor.	0.610
LOC109512841	LOC109522770	ENSHCOP00000007909	ENSHCOP00000025472	E1A binding protein p300 a.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b.	0.920
LOC109512841	LOC109524475	ENSHCOP00000007909	ENSHCOP00000002512	E1A binding protein p300 a.	Uncharacterized protein.	0.610
LOC109512841	ash2l	ENSHCOP00000007909	ENSHCOP00000000784	E1A binding protein p300 a.	Ash2 like, histone lysine methyltransferase complex subunit.	0.539
LOC109512841	brca1	ENSHCOP00000007909	ENSHCOP00000016663	E1A binding protein p300 a.	Uncharacterized protein.	0.760
LOC109512841	cited1	ENSHCOP00000007909	ENSHCOP00000015903	E1A binding protein p300 a.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	0.710
LOC109512841	hsp90ab1	ENSHCOP00000007909	ENSHCOP00000003821	E1A binding protein p300 a.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.414
LOC109512841	rbbp5	ENSHCOP00000007909	ENSHCOP00000010377	E1A binding protein p300 a.	Retinoblastoma binding protein 5.	0.548
LOC109514850	AR	ENSHCOP00000024673	ENSHCOP00000005587	E1A binding protein p300 b.	Androgen receptor.	0.610
LOC109514850	LOC109522770	ENSHCOP00000024673	ENSHCOP00000025472	E1A binding protein p300 b.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b.	0.920
LOC109514850	LOC109524475	ENSHCOP00000024673	ENSHCOP00000002512	E1A binding protein p300 b.	Uncharacterized protein.	0.610
LOC109514850	ash2l	ENSHCOP00000024673	ENSHCOP00000000784	E1A binding protein p300 b.	Ash2 like, histone lysine methyltransferase complex subunit.	0.539
LOC109514850	brca1	ENSHCOP00000024673	ENSHCOP00000016663	E1A binding protein p300 b.	Uncharacterized protein.	0.760
LOC109514850	cited1	ENSHCOP00000024673	ENSHCOP00000015903	E1A binding protein p300 b.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	0.710
LOC109514850	hsp90ab1	ENSHCOP00000024673	ENSHCOP00000003821	E1A binding protein p300 b.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.414