16 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109528323	Uncharacterized protein. (1237 aa)
	rtn4r	Reticulon 4 receptor. (467 aa)
	nin	Ninein (GSK3B interacting protein). (1329 aa)
	dcc	DCC netrin 1 receptor. (1445 aa)
	LOC109524482	Glycoprotein M6Aa. (267 aa)
	LOC109518185	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2216 aa)
	c9orf72	Zgc:100846. (443 aa)
	LOC109521690	Uncharacterized protein. (250 aa)
	Neo1	Ig-like domain-containing protein. (108 aa)
	NEO1	Neogenin 1. (1180 aa)
	myo9a	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2292 aa)
	LOC109520216	L1 cell adhesion molecule, paralog a. (1202 aa)
	flrt3	Fibronectin leucine rich transmembrane 3. (650 aa)
	shtn1	Shootin 1. (431 aa)
	ENSHCOP00000002404	Si:dkey-280e21.3. (292 aa)
	LOC109521915	Cordon-bleu WH2 repeat protein. (1443 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002404	LOC109520216	ENSHCOP00000002404	ENSHCOP00000009519	Si:dkey-280e21.3.	L1 cell adhesion molecule, paralog a.	0.406
ENSHCOP00000002404	LOC109528323	ENSHCOP00000002404	ENSHCOP00000003757	Si:dkey-280e21.3.	Uncharacterized protein.	0.406
LOC109520216	ENSHCOP00000002404	ENSHCOP00000009519	ENSHCOP00000002404	L1 cell adhesion molecule, paralog a.	Si:dkey-280e21.3.	0.406
LOC109520216	shtn1	ENSHCOP00000009519	ENSHCOP00000006543	L1 cell adhesion molecule, paralog a.	Shootin 1.	0.406
LOC109528323	ENSHCOP00000002404	ENSHCOP00000003757	ENSHCOP00000002404	Uncharacterized protein.	Si:dkey-280e21.3.	0.406
LOC109528323	shtn1	ENSHCOP00000003757	ENSHCOP00000006543	Uncharacterized protein.	Shootin 1.	0.406
NEO1	Neo1	ENSHCOP00000014708	ENSHCOP00000014714	Neogenin 1.	Ig-like domain-containing protein.	0.900
Neo1	NEO1	ENSHCOP00000014714	ENSHCOP00000014708	Ig-like domain-containing protein.	Neogenin 1.	0.900
shtn1	LOC109520216	ENSHCOP00000006543	ENSHCOP00000009519	Shootin 1.	L1 cell adhesion molecule, paralog a.	0.406
shtn1	LOC109528323	ENSHCOP00000006543	ENSHCOP00000003757	Shootin 1.	Uncharacterized protein.	0.406