25 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	egf	Epidermal growth factor. (979 aa)
	LOC109521650	Cdkn1a interacting zinc finger protein 1a. (668 aa)
	cdt1	Chromatin licensing and DNA replication factor 1. (617 aa)
	LOC109517783	Bromodomain and PHD finger containing, 3b. (1155 aa)
	e2f8	E2F transcription factor 8. (866 aa)
	LOC109527038	ATPase family AAA domain containing 5a. (1619 aa)
	ENSHCOP00000005103	Uncharacterized protein. (167 aa)
	LOC109527782	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (449 aa)
	dbf4	DBF4-type domain-containing protein. (388 aa)
	stoml2	Stomatin (EPB72)-like 2. (349 aa)
	baz1a	Bromodomain adjacent to zinc finger domain 1A. (1129 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1267 aa)
	Ucn	CRF domain-containing protein. (134 aa)
	ssbp1	Single-stranded DNA binding protein 1. (147 aa)
	WIZ	WIZ zinc finger. (945 aa)
	LOC109529213	Bromodomain and PHD finger containing, 3a. (1200 aa)
	ino80	INO80 complex ATPase subunit. (1543 aa)
	atrx	ATRX chromatin remodeler. (1645 aa)
	ENSHCOP00000022006	Uncharacterized protein. (852 aa)
	e2f7	E2F transcription factor 7. (662 aa)
	dna2	DNA replication helicase/nuclease 2. (1305 aa)
	ENSHCOP00000026411	Uncharacterized protein. (408 aa)
	cdc7	Cell division cycle 7 homolog (S. cerevisiae); Belongs to the protein kinase superfamily. (486 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (658 aa)
	LOC109512602	Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily. (421 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000005103	baz1a	ENSHCOP00000005103	ENSHCOP00000000048	Uncharacterized protein.	Bromodomain adjacent to zinc finger domain 1A.	0.444
ENSHCOP00000022006	ENSHCOP00000026411	ENSHCOP00000022006	ENSHCOP00000026411	Uncharacterized protein.	Uncharacterized protein.	0.503
ENSHCOP00000022006	LOC109527038	ENSHCOP00000022006	ENSHCOP00000004580	Uncharacterized protein.	ATPase family AAA domain containing 5a.	0.503
ENSHCOP00000026411	ENSHCOP00000022006	ENSHCOP00000026411	ENSHCOP00000022006	Uncharacterized protein.	Uncharacterized protein.	0.503
ENSHCOP00000026411	LOC109517783	ENSHCOP00000026411	ENSHCOP00000002741	Uncharacterized protein.	Bromodomain and PHD finger containing, 3b.	0.401
ENSHCOP00000026411	LOC109529213	ENSHCOP00000026411	ENSHCOP00000016937	Uncharacterized protein.	Bromodomain and PHD finger containing, 3a.	0.401
ENSHCOP00000026411	cdt1	ENSHCOP00000026411	ENSHCOP00000002133	Uncharacterized protein.	Chromatin licensing and DNA replication factor 1.	0.687
ENSHCOP00000026411	dna2	ENSHCOP00000026411	ENSHCOP00000024731	Uncharacterized protein.	DNA replication helicase/nuclease 2.	0.829
LOC109512602	LOC109527782	ENSHCOP00000001330	ENSHCOP00000005346	Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.901
LOC109517783	ENSHCOP00000026411	ENSHCOP00000002741	ENSHCOP00000026411	Bromodomain and PHD finger containing, 3b.	Uncharacterized protein.	0.401
LOC109517783	LOC109527038	ENSHCOP00000002741	ENSHCOP00000004580	Bromodomain and PHD finger containing, 3b.	ATPase family AAA domain containing 5a.	0.401
LOC109527038	ENSHCOP00000022006	ENSHCOP00000004580	ENSHCOP00000022006	ATPase family AAA domain containing 5a.	Uncharacterized protein.	0.503
LOC109527038	LOC109517783	ENSHCOP00000004580	ENSHCOP00000002741	ATPase family AAA domain containing 5a.	Bromodomain and PHD finger containing, 3b.	0.401
LOC109527038	LOC109529213	ENSHCOP00000004580	ENSHCOP00000016937	ATPase family AAA domain containing 5a.	Bromodomain and PHD finger containing, 3a.	0.401
LOC109527038	cdt1	ENSHCOP00000004580	ENSHCOP00000002133	ATPase family AAA domain containing 5a.	Chromatin licensing and DNA replication factor 1.	0.687
LOC109527038	dna2	ENSHCOP00000004580	ENSHCOP00000024731	ATPase family AAA domain containing 5a.	DNA replication helicase/nuclease 2.	0.829
LOC109527782	LOC109512602	ENSHCOP00000005346	ENSHCOP00000001330	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.	0.901
LOC109529213	ENSHCOP00000026411	ENSHCOP00000016937	ENSHCOP00000026411	Bromodomain and PHD finger containing, 3a.	Uncharacterized protein.	0.401
LOC109529213	LOC109527038	ENSHCOP00000016937	ENSHCOP00000004580	Bromodomain and PHD finger containing, 3a.	ATPase family AAA domain containing 5a.	0.401
atrx	baz1a	ENSHCOP00000019999	ENSHCOP00000000048	ATRX chromatin remodeler.	Bromodomain adjacent to zinc finger domain 1A.	0.444