(19 nodes) Positive regulation of mRNA splicing, via spliceosome network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	rbmx	RNA binding motif protein X-linked. (387 aa)
	Nup98	Uncharacterized protein. (357 aa)
	ENSHCOP00000006981	Peptidase S59 domain-containing protein. (292 aa)
	cirbp	Cold inducible RNA binding protein b. (150 aa)
	LOC109513135	Cugbp, Elav-like family member 3a. (407 aa)
	snw1	SNW domain containing 1. (536 aa)
	ENSHCOP00000021751	Uncharacterized protein. (409 aa)
	dazap1	DAZ associated protein 1. (401 aa)
	ENSHCOP00000014626	RRM domain-containing protein. (113 aa)
	hmx2	H6 family homeobox 2. (261 aa)
	LOC109522799	Cugbp, Elav-like family member 3b. (386 aa)
	celf4	CUGBP, Elav-like family member 4. (437 aa)
	ncl	Nucleolin. (708 aa)
	ENSHCOP00000004787	Transformer 2 alpha homolog. (199 aa)
	ENSHCOP00000004807	Transformer 2 alpha homolog. (201 aa)
	LOC109520575	Uncharacterized protein. (425 aa)
	sf3b4	Splicing factor 3b, subunit 4. (399 aa)
	LOC109517372	Transformer 2 beta homolog. (283 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000004787	cirbp	ENSHCOP00000004787	ENSHCOP00000017405	Transformer 2 alpha homolog.	Cold inducible RNA binding protein b.	0.505
ENSHCOP00000004787	dazap1	ENSHCOP00000004787	ENSHCOP00000021582	Transformer 2 alpha homolog.	DAZ associated protein 1.	0.430
ENSHCOP00000004787	ncl	ENSHCOP00000004787	ENSHCOP00000008071	Transformer 2 alpha homolog.	Nucleolin.	0.412
ENSHCOP00000004787	prpf19	ENSHCOP00000004787	ENSHCOP00000026102	Transformer 2 alpha homolog.	Pre-mRNA processing factor 19.	0.425
ENSHCOP00000004787	rbmx	ENSHCOP00000004787	ENSHCOP00000017385	Transformer 2 alpha homolog.	RNA binding motif protein X-linked.	0.582
ENSHCOP00000004787	sf3b4	ENSHCOP00000004787	ENSHCOP00000001959	Transformer 2 alpha homolog.	Splicing factor 3b, subunit 4.	0.482
ENSHCOP00000004807	cirbp	ENSHCOP00000004807	ENSHCOP00000017405	Transformer 2 alpha homolog.	Cold inducible RNA binding protein b.	0.449
ENSHCOP00000004807	prpf19	ENSHCOP00000004807	ENSHCOP00000026102	Transformer 2 alpha homolog.	Pre-mRNA processing factor 19.	0.425
ENSHCOP00000004807	rbmx	ENSHCOP00000004807	ENSHCOP00000017385	Transformer 2 alpha homolog.	RNA binding motif protein X-linked.	0.523
ENSHCOP00000004807	sf3b4	ENSHCOP00000004807	ENSHCOP00000001959	Transformer 2 alpha homolog.	Splicing factor 3b, subunit 4.	0.482
ENSHCOP00000006981	ENSHCOP00000021751	ENSHCOP00000006981	ENSHCOP00000021751	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.944
ENSHCOP00000006981	Nup98	ENSHCOP00000006981	ENSHCOP00000006994	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.930
ENSHCOP00000014626	cirbp	ENSHCOP00000014626	ENSHCOP00000017405	RRM domain-containing protein.	Cold inducible RNA binding protein b.	0.495
ENSHCOP00000014626	dazap1	ENSHCOP00000014626	ENSHCOP00000021582	RRM domain-containing protein.	DAZ associated protein 1.	0.437
ENSHCOP00000014626	prpf19	ENSHCOP00000014626	ENSHCOP00000026102	RRM domain-containing protein.	Pre-mRNA processing factor 19.	0.425
ENSHCOP00000014626	rbmx	ENSHCOP00000014626	ENSHCOP00000017385	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.565
ENSHCOP00000014626	sf3b4	ENSHCOP00000014626	ENSHCOP00000001959	RRM domain-containing protein.	Splicing factor 3b, subunit 4.	0.571
ENSHCOP00000021751	ENSHCOP00000006981	ENSHCOP00000021751	ENSHCOP00000006981	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.944
ENSHCOP00000021751	Nup98	ENSHCOP00000021751	ENSHCOP00000006994	Uncharacterized protein.	Uncharacterized protein.	0.928
LOC109517372	cirbp	ENSHCOP00000016357	ENSHCOP00000017405	Transformer 2 beta homolog.	Cold inducible RNA binding protein b.	0.496