15 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdk5rap3	CDK5 regulatory subunit associated protein 3. (501 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (658 aa)
	LOC109508122	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (283 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	mtdh	Uncharacterized protein. (544 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	pdcd11	Programmed cell death 11. (1811 aa)
	LOC109509783	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109527991	Uncharacterized protein. (485 aa)
	commd6	COMM domain containing 6. (199 aa)
	ENSHCOP00000010185	ANK_REP_REGION domain-containing protein. (290 aa)
	LOC109519522	ANK_REP_REGION domain-containing protein. (340 aa)
	rnf25	Ring finger protein 25. (423 aa)
	commd7	COMM domain containing 7. (199 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109509783	LOC109519522	ENSHCOP00000026447	ENSHCOP00000006784	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	ANK_REP_REGION domain-containing protein.	0.905
LOC109519522	LOC109509783	ENSHCOP00000006784	ENSHCOP00000026447	ANK_REP_REGION domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.905
commd6	commd7	ENSHCOP00000028083	ENSHCOP00000003200	COMM domain containing 6.	COMM domain containing 7.	0.908
commd7	commd6	ENSHCOP00000003200	ENSHCOP00000028083	COMM domain containing 7.	COMM domain containing 6.	0.908
psma6	rnf25	ENSHCOP00000016047	ENSHCOP00000005015	Proteasome subunit alpha type.	Ring finger protein 25.	0.568
rnf25	psma6	ENSHCOP00000005015	ENSHCOP00000016047	Ring finger protein 25.	Proteasome subunit alpha type.	0.568