59 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cth	Cystathionase (cystathionine gamma-lyase), like. (411 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (504 aa)
	LOC109528183	Ribosomal protein S6 kinase. (844 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1267 aa)
	ENSHCOP00000009932	Tripartite motif containing 32. (638 aa)
	ENSHCOP00000009513	Uncharacterized protein. (576 aa)
	tnfrsf11a	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator. (595 aa)
	LOC109524061	Uncharacterized protein. (935 aa)
	dhx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33. (681 aa)
	eif2ak2	Uncharacterized protein. (609 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	GREM1	Gremlin; Belongs to the DAN family. (177 aa)
	ENSHCOP00000007014	Interleukin-1 receptor-associated kinase 3. (331 aa)
	LOC109513557	CD40 molecule, TNF receptor superfamily member 5. (309 aa)
	LOC109516310	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (448 aa)
	LOC109525796	Inhibitor of nuclear factor kappa B kinase subunit beta. (674 aa)
	AR	Androgen receptor. (703 aa)
	rnf25	Ring finger protein 25. (423 aa)
	trappc9	Trafficking protein particle complex 9. (1134 aa)
	LOC109517693	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (568 aa)
	tnfsf11	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (266 aa)
	LOC109524475	Uncharacterized protein. (661 aa)
	arhgef2	Rho guanine nucleotide exchange factor (GEF) 1a. (880 aa)
	LOC109510598	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
	ENSHCOP00000000810	MALT paracaspase 2. (513 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (606 aa)
	LOC109513432	Interleukin-1. (238 aa)
	LOC109527991	Uncharacterized protein. (485 aa)
	LOC109521304	CTCK domain-containing protein. (129 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (585 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (556 aa)
	LOC109516174	Tripartite motif containing 8b. (583 aa)
	LOC109516272	Component of inhibitor of nuclear factor kappa B kinase complex. (739 aa)
	ENSHCOP00000025919	Uncharacterized protein. (137 aa)
	LOC109511934	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (227 aa)
	LOC109512681	RING-type domain-containing protein. (553 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (562 aa)
	LOC109518553	Protein kinase domain-containing protein. (796 aa)
	ENSHCOP00000011594	Uncharacterized protein. (127 aa)
	terf2ip	BRCT domain-containing protein. (671 aa)
	LOC109525897	Uncharacterized protein. (532 aa)
	trim62	Tripartite motif containing 62, tandem duplicate 1. (475 aa)
	ENSHCOP00000017013	Uncharacterized protein. (430 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (949 aa)
	LOC109521023	Tumor necrosis factor b (TNF superfamily, member 2); Belongs to the tumor necrosis factor family. (266 aa)
	prdx3	Peroxiredoxin 3. (241 aa)
	LOC109520405	TNF receptor-associated factor. (487 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	card11	Caspase recruitment domain family, member 11. (1163 aa)
	LOC109518471	Uncharacterized protein. (767 aa)
	Trim37	RING-type domain-containing protein. (99 aa)
	LOC109531092	Ribosomal protein S6 kinase. (784 aa)
	LOC109531236	MALT paracaspase 3. (638 aa)
	LOC109531636	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (388 aa)
	ripk4	Receptor-interacting serine-threonine kinase 4. (799 aa)
	card14	Caspase recruitment domain family, member 14. (744 aa)
	mtdh	Uncharacterized protein. (544 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	LOC109512841	ENSHCOP00000005587	ENSHCOP00000007909	Androgen receptor.	E1A binding protein p300 a.	0.610
AR	LOC109514850	ENSHCOP00000005587	ENSHCOP00000024673	Androgen receptor.	E1A binding protein p300 b.	0.610
AR	LOC109524475	ENSHCOP00000005587	ENSHCOP00000002512	Androgen receptor.	Uncharacterized protein.	0.906
ENSHCOP00000000810	LOC109513432	ENSHCOP00000000810	ENSHCOP00000012063	MALT paracaspase 2.	Interleukin-1.	0.478
ENSHCOP00000000810	LOC109516272	ENSHCOP00000000810	ENSHCOP00000025900	MALT paracaspase 2.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.533
ENSHCOP00000000810	LOC109518553	ENSHCOP00000000810	ENSHCOP00000014493	MALT paracaspase 2.	Protein kinase domain-containing protein.	0.474
ENSHCOP00000000810	LOC109525796	ENSHCOP00000000810	ENSHCOP00000005828	MALT paracaspase 2.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.533
ENSHCOP00000000810	card11	ENSHCOP00000000810	ENSHCOP00000020756	MALT paracaspase 2.	Caspase recruitment domain family, member 11.	0.916
ENSHCOP00000000810	card14	ENSHCOP00000000810	ENSHCOP00000024243	MALT paracaspase 2.	Caspase recruitment domain family, member 14.	0.489
ENSHCOP00000000810	traf6	ENSHCOP00000000810	ENSHCOP00000015515	MALT paracaspase 2.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.897
ENSHCOP00000007014	ENSHCOP00000017013	ENSHCOP00000007014	ENSHCOP00000017013	Interleukin-1 receptor-associated kinase 3.	Uncharacterized protein.	0.546
ENSHCOP00000007014	LOC109513432	ENSHCOP00000007014	ENSHCOP00000012063	Interleukin-1 receptor-associated kinase 3.	Interleukin-1.	0.500
ENSHCOP00000007014	LOC109520405	ENSHCOP00000007014	ENSHCOP00000018839	Interleukin-1 receptor-associated kinase 3.	TNF receptor-associated factor.	0.418
ENSHCOP00000007014	irak1	ENSHCOP00000007014	ENSHCOP00000012839	Interleukin-1 receptor-associated kinase 3.	Interleukin-1 receptor-associated kinase 1.	0.883
ENSHCOP00000007014	ripk4	ENSHCOP00000007014	ENSHCOP00000023817	Interleukin-1 receptor-associated kinase 3.	Receptor-interacting serine-threonine kinase 4.	0.400
ENSHCOP00000007014	traf6	ENSHCOP00000007014	ENSHCOP00000015515	Interleukin-1 receptor-associated kinase 3.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.842
ENSHCOP00000009513	arhgef2	ENSHCOP00000009513	ENSHCOP00000001806	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 1a.	0.901
ENSHCOP00000009932	LOC109512681	ENSHCOP00000009932	ENSHCOP00000015676	Tripartite motif containing 32.	RING-type domain-containing protein.	0.407
ENSHCOP00000009932	LOC109516174	ENSHCOP00000009932	ENSHCOP00000025435	Tripartite motif containing 32.	Tripartite motif containing 8b.	0.407
ENSHCOP00000009932	traf6	ENSHCOP00000009932	ENSHCOP00000015515	Tripartite motif containing 32.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.557