15 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phb	Prohibitin. (271 aa)
	rnf6	Ring finger protein (C3H2C3 type) 6. (714 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109525372	RBR-type E3 ubiquitin transferase. (489 aa)
	ncor1	Nuclear receptor corepressor 1. (2383 aa)
	Msc	Musculin (activated B-cell factor-1). (120 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	prmt2	Protein arginine methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (378 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (487 aa)
	ncor2	Nuclear receptor corepressor 2. (2225 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	tcf21	Transcription factor 21. (159 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	dab2	DAB adaptor protein 2. (741 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000019285	LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 a.	0.442
ENSHCOP00000019285	LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 b.	0.442
ENSHCOP00000019285	ncor1	ENSHCOP00000019285	ENSHCOP00000022282	Deacetylase sirtuin-type domain-containing protein.	Nuclear receptor corepressor 1.	0.607
ENSHCOP00000019285	ncor2	ENSHCOP00000019285	ENSHCOP00000010931	Deacetylase sirtuin-type domain-containing protein.	Nuclear receptor corepressor 2.	0.607
ENSHCOP00000019306	LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	Sirtuin 1.	E1A binding protein p300 a.	0.442
ENSHCOP00000019306	LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	Sirtuin 1.	E1A binding protein p300 b.	0.442
ENSHCOP00000019306	ncor1	ENSHCOP00000019306	ENSHCOP00000022282	Sirtuin 1.	Nuclear receptor corepressor 1.	0.607
ENSHCOP00000019306	ncor2	ENSHCOP00000019306	ENSHCOP00000010931	Sirtuin 1.	Nuclear receptor corepressor 2.	0.607
LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	ENSHCOP00000019285	E1A binding protein p300 a.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	ENSHCOP00000019306	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	LOC109523155	ENSHCOP00000007909	ENSHCOP00000003219	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	ncor1	ENSHCOP00000007909	ENSHCOP00000022282	E1A binding protein p300 a.	Nuclear receptor corepressor 1.	0.597
LOC109512841	ncor2	ENSHCOP00000007909	ENSHCOP00000010931	E1A binding protein p300 a.	Nuclear receptor corepressor 2.	0.597
LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	ENSHCOP00000019285	E1A binding protein p300 b.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	ENSHCOP00000019306	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	LOC109523155	ENSHCOP00000024673	ENSHCOP00000003219	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	ncor1	ENSHCOP00000024673	ENSHCOP00000022282	E1A binding protein p300 b.	Nuclear receptor corepressor 1.	0.597
LOC109514850	ncor2	ENSHCOP00000024673	ENSHCOP00000010931	E1A binding protein p300 b.	Nuclear receptor corepressor 2.	0.597
LOC109523155	LOC109512841	ENSHCOP00000003219	ENSHCOP00000007909	Sirtuin 1.	E1A binding protein p300 a.	0.442
LOC109523155	LOC109514850	ENSHCOP00000003219	ENSHCOP00000024673	Sirtuin 1.	E1A binding protein p300 b.	0.442