54 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109521629	GATA binding protein 1a. (416 aa)
	ENSHCOP00000002361	Glycoprotein IX (platelet). (262 aa)
	LOC109514607	Tropomyosin 3; Belongs to the tropomyosin family. (284 aa)
	fam20c	Fam20C domain-containing protein. (557 aa)
	melk	Non-specific serine/threonine protein kinase. (679 aa)
	LOC109507403	Tropomyosin 4; Belongs to the tropomyosin family. (284 aa)
	LOC109528544	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	LOC109514222	Negative regulator of reactive oxygen species. (678 aa)
	LOC109530507	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109528893	Ring finger protein 145b. (677 aa)
	maea	Macrophage erythroblast attacher. (396 aa)
	lrrk1	Leucine-rich repeat kinase 1. (1961 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	LOC109528721	Tetraspanin. (211 aa)
	LOC109520468	SH3 domain-containing protein. (105 aa)
	src	Tyrosine-protein kinase. (543 aa)
	ENSHCOP00000018882	annotation not available (86 aa)
	slc40a1	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily. (550 aa)
	LOC109520596	Abl-interactor 1b. (390 aa)
	LOC109532055	Tropomyosin 4a; Belongs to the tropomyosin family. (392 aa)
	LOC109507770	Tetraspanin 2a; Belongs to the tetraspanin (TM4SF) family. (203 aa)
	srf	Serum response factor b. (601 aa)
	ENSHCOP00000016513	Aminotran_1_2 domain-containing protein. (204 aa)
	ENSHCOP00000016503	Preseq_ALAS domain-containing protein. (188 aa)
	bdh2	3-hydroxybutyrate dehydrogenase, type 2. (242 aa)
	ENSHCOP00000014594	SH2 domain-containing protein. (44 aa)
	LOC109525216	Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family. (333 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (583 aa)
	LOC109522750	FAM20C golgi associated secretory pathway kinase a. (573 aa)
	lmo2	LIM domain only 2 (rhombotin-like 1). (155 aa)
	ercc2	Excision repair cross-complementation group 2. (591 aa)
	nfil3	Nuclear factor, interleukin 3 regulated. (424 aa)
	lyar	Ly1 antibody reactive homolog (mouse). (305 aa)
	ABI1	Abl-interactor 1a. (471 aa)
	TPM1	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	LOC109528144	Zmp:0000000662. (626 aa)
	SRF	Serum response factor. (344 aa)
	epo	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family. (185 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	ENSHCOP00000007741	SH2 domain-containing protein. (44 aa)
	LOC109516855	T-cell acute lymphocytic leukemia 1. (387 aa)
	ENSHCOP00000007099	annotation not available (72 aa)
	LOC109513573	Tyrosine-protein kinase. (538 aa)
	LOC109512946	ATPase H+ transporting accessory protein 1b. (449 aa)
	rps19	Ribosomal protein S19. (146 aa)
	LOC109513802	Phospholipase A(2). (162 aa)
	tert	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1065 aa)
	gp1bb	Glycoprotein Ib platelet subunit beta. (210 aa)
	smad1	Mothers against decapentaplegic homolog. (465 aa)
	sh2b3	SH2B adaptor protein 3. (671 aa)
	atp6ap1	ATPase H+ transporting accessory protein 1a. (466 aa)
	LOC109511800	Protein tyrosine phosphatase non-receptor type 11b. (558 aa)
	tnfsf11	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (266 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002361	ENSHCOP00000007099	ENSHCOP00000002361	ENSHCOP00000007099	Glycoprotein IX (platelet).	annotation not available	0.810
ENSHCOP00000002361	gp1bb	ENSHCOP00000002361	ENSHCOP00000004399	Glycoprotein IX (platelet).	Glycoprotein Ib platelet subunit beta.	0.960
ENSHCOP00000007099	ENSHCOP00000002361	ENSHCOP00000007099	ENSHCOP00000002361	annotation not available	Glycoprotein IX (platelet).	0.810
ENSHCOP00000007741	LOC109513573	ENSHCOP00000007741	ENSHCOP00000006859	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.469
ENSHCOP00000007741	src	ENSHCOP00000007741	ENSHCOP00000000379	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.469
ENSHCOP00000014594	LOC109513573	ENSHCOP00000014594	ENSHCOP00000006859	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.469
ENSHCOP00000014594	src	ENSHCOP00000014594	ENSHCOP00000000379	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.469
ENSHCOP00000016503	ENSHCOP00000016513	ENSHCOP00000016503	ENSHCOP00000016513	Preseq_ALAS domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.832
ENSHCOP00000016503	LOC109525216	ENSHCOP00000016503	ENSHCOP00000014376	Preseq_ALAS domain-containing protein.	Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.415
ENSHCOP00000016513	ENSHCOP00000016503	ENSHCOP00000016513	ENSHCOP00000016503	Aminotran_1_2 domain-containing protein.	Preseq_ALAS domain-containing protein.	0.832
ENSHCOP00000016513	LOC109525216	ENSHCOP00000016513	ENSHCOP00000014376	Aminotran_1_2 domain-containing protein.	Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.415
ENSHCOP00000018882	LOC109512841	ENSHCOP00000018882	ENSHCOP00000007909	annotation not available	E1A binding protein p300 a.	0.644
ENSHCOP00000018882	LOC109514850	ENSHCOP00000018882	ENSHCOP00000024673	annotation not available	E1A binding protein p300 b.	0.644
ENSHCOP00000018882	LOC109516855	ENSHCOP00000018882	ENSHCOP00000007539	annotation not available	T-cell acute lymphocytic leukemia 1.	0.847
ENSHCOP00000018882	lmo2	ENSHCOP00000018882	ENSHCOP00000013680	annotation not available	LIM domain only 2 (rhombotin-like 1).	0.949
LOC109511800	LOC109513573	ENSHCOP00000002681	ENSHCOP00000006859	Protein tyrosine phosphatase non-receptor type 11b.	Tyrosine-protein kinase.	0.469
LOC109511800	ptpn11	ENSHCOP00000002681	ENSHCOP00000019435	Protein tyrosine phosphatase non-receptor type 11b.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC109511800	src	ENSHCOP00000002681	ENSHCOP00000000379	Protein tyrosine phosphatase non-receptor type 11b.	Tyrosine-protein kinase.	0.469
LOC109512841	ENSHCOP00000018882	ENSHCOP00000007909	ENSHCOP00000018882	E1A binding protein p300 a.	annotation not available	0.644
LOC109512841	LOC109516855	ENSHCOP00000007909	ENSHCOP00000007539	E1A binding protein p300 a.	T-cell acute lymphocytic leukemia 1.	0.466