43 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	soga1	Suppressor of glucose, autophagy associated 1. (1663 aa)
	wdtc1	WD and tetratricopeptide repeats 1. (656 aa)
	ENSHCOP00000010512	Uncharacterized protein. (148 aa)
	tspo	Translocator protein. (161 aa)
	sirt4	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily. (308 aa)
	Pibf1	Progesterone immunomodulatory binding factor 1. (368 aa)
	ENSHCOP00000015529	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (134 aa)
	SNAI2	Snail family transcriptional repressor 2. (249 aa)
	ENSHCOP00000016349	Nuclear protein 1a. (76 aa)
	brca1	Uncharacterized protein. (1141 aa)
	flcn	Folliculin. (550 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	LOC109507452	ATCAY kinesin light chain interacting caytaxin b. (314 aa)
	dkk3	Dickkopf WNT signaling pathway inhibitor 3a. (220 aa)
	ENSHCOP00000027903	annotation not available (76 aa)
	ENSHCOP00000026641	Uncharacterized protein. (264 aa)
	nupr1	Nuclear protein 1b. (74 aa)
	sirt6	Sirtuin 6. (347 aa)
	prmt3	Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (512 aa)
	rd3	Retinal degeneration 3, GUCY2D regulator. (213 aa)
	LOC109519035	Leptin receptor. (1118 aa)
	LOC109508004	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (212 aa)
	parp1	Poly [ADP-ribose] polymerase. (1020 aa)
	LOC109531179	PDZ domain containing 3b. (474 aa)
	LOC109513534	Uncharacterized protein. (259 aa)
	LOC109520718	Dickkopf WNT signaling pathway inhibitor 3b. (298 aa)
	pid1	Phosphotyrosine interaction domain containing 1. (225 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109521511	Protein kinase domain-containing protein. (358 aa)
	slc27a4	Solute carrier family 27 member 4. (590 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	acmsd	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (340 aa)
	cda	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (165 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	FAM3A	Family with sequence similarity 3 member A. (230 aa)
	fam3c	Family with sequence similarity 3 member C. (232 aa)
	LOC109510825	Uncharacterized protein. (393 aa)
	tigar	TP53 induced glycolysis regulatory phosphatase a. (263 aa)
	atcay	ATCAY kinesin light chain interacting caytaxin a. (341 aa)
	LOC109531655	Apolipoprotein Eb. (297 aa)
	LOC109531653	Uncharacterized protein. (270 aa)
	etfbkmt	Electron transfer flavoprotein subunit beta lysine methyltransferase. (261 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000019285	LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 a.	0.442
ENSHCOP00000019285	LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	Deacetylase sirtuin-type domain-containing protein.	E1A binding protein p300 b.	0.442
ENSHCOP00000019285	sirt6	ENSHCOP00000019285	ENSHCOP00000000544	Deacetylase sirtuin-type domain-containing protein.	Sirtuin 6.	0.430
ENSHCOP00000019306	LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	Sirtuin 1.	E1A binding protein p300 a.	0.442
ENSHCOP00000019306	LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	Sirtuin 1.	E1A binding protein p300 b.	0.442
ENSHCOP00000019306	sirt4	ENSHCOP00000019306	ENSHCOP00000014164	Sirtuin 1.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.479
ENSHCOP00000019306	sirt6	ENSHCOP00000019306	ENSHCOP00000000544	Sirtuin 1.	Sirtuin 6.	0.430
ENSHCOP00000026641	Pibf1	ENSHCOP00000026641	ENSHCOP00000014420	Uncharacterized protein.	Progesterone immunomodulatory binding factor 1.	0.928
LOC109507452	cda	ENSHCOP00000001548	ENSHCOP00000007797	ATCAY kinesin light chain interacting caytaxin b.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.435
LOC109512841	ENSHCOP00000019285	ENSHCOP00000007909	ENSHCOP00000019285	E1A binding protein p300 a.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109512841	ENSHCOP00000019306	ENSHCOP00000007909	ENSHCOP00000019306	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	LOC109523155	ENSHCOP00000007909	ENSHCOP00000003219	E1A binding protein p300 a.	Sirtuin 1.	0.442
LOC109512841	brca1	ENSHCOP00000007909	ENSHCOP00000016663	E1A binding protein p300 a.	Uncharacterized protein.	0.760
LOC109512841	parp1	ENSHCOP00000007909	ENSHCOP00000023234	E1A binding protein p300 a.	Poly [ADP-ribose] polymerase.	0.538
LOC109512841	prmt3	ENSHCOP00000007909	ENSHCOP00000019775	E1A binding protein p300 a.	Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.433
LOC109514850	ENSHCOP00000019285	ENSHCOP00000024673	ENSHCOP00000019285	E1A binding protein p300 b.	Deacetylase sirtuin-type domain-containing protein.	0.442
LOC109514850	ENSHCOP00000019306	ENSHCOP00000024673	ENSHCOP00000019306	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	LOC109523155	ENSHCOP00000024673	ENSHCOP00000003219	E1A binding protein p300 b.	Sirtuin 1.	0.442
LOC109514850	brca1	ENSHCOP00000024673	ENSHCOP00000016663	E1A binding protein p300 b.	Uncharacterized protein.	0.760
LOC109514850	parp1	ENSHCOP00000024673	ENSHCOP00000023234	E1A binding protein p300 b.	Poly [ADP-ribose] polymerase.	0.538