STRINGSTRING
snrpd3 snrpd3 lsm7 lsm7 mtrex mtrex ddx23 ddx23 eftud2 eftud2 sf3b1 sf3b1 prpf19 prpf19 prpf8 prpf8 rbm22 rbm22 sf3a3 sf3a3 snrpb snrpb syncrip syncrip lsm2 lsm2 lsm3 lsm3 syf2 syf2 ppie ppie cdc40 cdc40 dhx35 dhx35 prpf6 prpf6 snw1 snw1 snrpd2 snrpd2 LOC109508638 LOC109508638 wdr83 wdr83 LOC109524881 LOC109524881 cunh19orf54 cunh19orf54 crnkl1 crnkl1 cwc22 cwc22 ENSHCOP00000018329 ENSHCOP00000018329 ppwd1 ppwd1 ess2 ess2 rbmx rbmx LOC109520981 LOC109520981 sf3b6 sf3b6 hnrnpm hnrnpm snrpe snrpe zcchc8 zcchc8 ENSHCOP00000015111 ENSHCOP00000015111 ppil3 ppil3 ENSHCOP00000014247 ENSHCOP00000014247 Snrnp200 Snrnp200 dhx34 dhx34 ppil1 ppil1 ENSHCOP00000013114 ENSHCOP00000013114 sf3b2 sf3b2 dhx8 dhx8 ENSHCOP00000013039 ENSHCOP00000013039 sf3a1 sf3a1 snrpg snrpg LOC109522402 LOC109522402 xab2 xab2 WDR25 WDR25 srrm1 srrm1 pnn pnn ENSHCOP00000006906 ENSHCOP00000006906 ppil2 ppil2 SART1 SART1 Gpatch1 Gpatch1 ENSHCOP00000005080 ENSHCOP00000005080 cwc15 cwc15 LOC109507180 LOC109507180 snrnp40 snrnp40 DDX41 DDX41 bcas2 bcas2 dhx38 dhx38 prpf4b prpf4b plrg1 plrg1 hnrnpr hnrnpr aqr aqr sf3a2 sf3a2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (101 aa)
mtrexMtr4 exosome RNA helicase. (981 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (803 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (972 aa)
sf3b1Splicing factor 3b, subunit 1. (1322 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
prpf8Pre-mRNA processing factor 8. (2339 aa)
rbm22RNA binding motif protein 22. (393 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
syncripSynaptotagmin binding, cytoplasmic RNA interacting protein, like. (544 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
syf2SYF2 pre-mRNA-splicing factor. (306 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
dhx35DEAH-box helicase 35. (699 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
snw1SNW domain containing 1. (536 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC109508638Sm domain-containing protein. (65 aa)
wdr83WD repeat domain containing 83. (311 aa)
LOC109524881Synaptotagmin binding, cytoplasmic RNA interacting protein. (533 aa)
cunh19orf54Zgc:153119. (313 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (686 aa)
cwc22CWC22 spliceosome associated protein homolog. (865 aa)
ENSHCOP00000018329Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (188 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (624 aa)
ess2Ess-2 splicing factor homolog. (473 aa)
rbmxRNA binding motif protein X-linked. (387 aa)
LOC109520981BTB (POZ) domain containing 6a. (445 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (644 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
zcchc8Zinc finger, CCHC domain containing 8. (779 aa)
ENSHCOP00000015111Small nuclear ribonucleoprotein polypeptide F. (128 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (203 aa)
ENSHCOP00000014247SEC63 domain-containing protein. (466 aa)
Snrnp200Helicase_PWI domain-containing protein. (558 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1134 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
ENSHCOP00000013114Uncharacterized protein. (111 aa)
sf3b2Splicing factor 3b, subunit 2. (846 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1199 aa)
ENSHCOP00000013039Helicase C-terminal domain-containing protein. (275 aa)
sf3a1Splicing factor 3a, subunit 1. (781 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
LOC109522402ISY1 splicing factor homolog. (340 aa)
xab2XPA binding protein 2. (846 aa)
WDR25WD repeat domain 25. (466 aa)
srrm1Serine/arginine repetitive matrix 1. (829 aa)
pnnPinin, desmosome associated protein. (676 aa)
ENSHCOP00000006906Uncharacterized protein. (65 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (531 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (781 aa)
Gpatch1DUF1604 domain-containing protein. (125 aa)
ENSHCOP00000005080Small nuclear ribonucleoprotein polypeptide A. (321 aa)
cwc15CWC15 spliceosome associated protein homolog. (245 aa)
LOC109507180Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (348 aa)
DDX41DEAD-box helicase 41. (614 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1240 aa)
prpf4bPre-mRNA processing factor 4Bb. (1012 aa)
plrg1Pleiotropic regulator 1. (510 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (630 aa)
aqrAquarius intron-binding spliceosomal factor. (1395 aa)
sf3a2Splicing factor 3a, subunit 2. (290 aa)
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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