21 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hmga1	Uncharacterized protein. (101 aa)
	becn1	Beclin 1, autophagy related. (447 aa)
	prelp	Proline/arginine-rich end leucine-rich repeat protein. (371 aa)
	wnt16	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (347 aa)
	mapkapk5	MAPK activated protein kinase 5. (471 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	ecrg4	ECRG4 augurin precursor b. (147 aa)
	LOC109511366	Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4). (125 aa)
	srf	Serum response factor b. (601 aa)
	LOC109507177	Uncharacterized protein. (118 aa)
	smc5	Structural maintenance of chromosomes 5. (1177 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	spns1	Spinster homolog 1 (Drosophila). (507 aa)
	SRF	Serum response factor. (344 aa)
	ENSHCOP00000023012	Uncharacterized protein. (1155 aa)
	tbx3	T-box transcription factor 3a. (723 aa)
	smc6	Si:dkey-119f1.1. (1086 aa)
	Hmga2	Uncharacterized protein. (98 aa)
	nsmce2	SP-RING-type domain-containing protein. (224 aa)
	LOC109525461	MAX network transcriptional repressor a. (560 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000023012	LOC109511366	ENSHCOP00000023012	ENSHCOP00000018867	Uncharacterized protein.	Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).	0.446
ENSHCOP00000023012	smc5	ENSHCOP00000023012	ENSHCOP00000003098	Uncharacterized protein.	Structural maintenance of chromosomes 5.	0.468
ENSHCOP00000023012	smc6	ENSHCOP00000023012	ENSHCOP00000007176	Uncharacterized protein.	Si:dkey-119f1.1.	0.455
Hmga2	hmga1	ENSHCOP00000007368	ENSHCOP00000016715	Uncharacterized protein.	Uncharacterized protein.	0.608
LOC109507177	hmga1	ENSHCOP00000001246	ENSHCOP00000016715	Uncharacterized protein.	Uncharacterized protein.	0.725
LOC109511366	ENSHCOP00000023012	ENSHCOP00000018867	ENSHCOP00000023012	Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).	Uncharacterized protein.	0.446
SRF	srf	ENSHCOP00000008944	ENSHCOP00000017074	Serum response factor.	Serum response factor b.	0.904
hmga1	Hmga2	ENSHCOP00000016715	ENSHCOP00000007368	Uncharacterized protein.	Uncharacterized protein.	0.608
hmga1	LOC109507177	ENSHCOP00000016715	ENSHCOP00000001246	Uncharacterized protein.	Uncharacterized protein.	0.725
nsmce2	smc5	ENSHCOP00000015514	ENSHCOP00000003098	SP-RING-type domain-containing protein.	Structural maintenance of chromosomes 5.	0.999
nsmce2	smc6	ENSHCOP00000015514	ENSHCOP00000007176	SP-RING-type domain-containing protein.	Si:dkey-119f1.1.	0.999
smc5	ENSHCOP00000023012	ENSHCOP00000003098	ENSHCOP00000023012	Structural maintenance of chromosomes 5.	Uncharacterized protein.	0.468
smc5	nsmce2	ENSHCOP00000003098	ENSHCOP00000015514	Structural maintenance of chromosomes 5.	SP-RING-type domain-containing protein.	0.999
smc5	smc6	ENSHCOP00000003098	ENSHCOP00000007176	Structural maintenance of chromosomes 5.	Si:dkey-119f1.1.	0.999
smc6	ENSHCOP00000023012	ENSHCOP00000007176	ENSHCOP00000023012	Si:dkey-119f1.1.	Uncharacterized protein.	0.455
smc6	nsmce2	ENSHCOP00000007176	ENSHCOP00000015514	Si:dkey-119f1.1.	SP-RING-type domain-containing protein.	0.999
smc6	smc5	ENSHCOP00000007176	ENSHCOP00000003098	Si:dkey-119f1.1.	Structural maintenance of chromosomes 5.	0.999
srf	SRF	ENSHCOP00000017074	ENSHCOP00000008944	Serum response factor b.	Serum response factor.	0.904