28 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109513432	Interleukin-1. (238 aa)
	LOC109511442	Programmed cell death 4a. (468 aa)
	ENSHCOP00000017280	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (261 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (949 aa)
	LOC109509738	Uncharacterized protein. (452 aa)
	tcim	Transcriptional and immune response regulator a. (100 aa)
	c1qtnf4	C1q and TNF related 4. (384 aa)
	LOC109516853	Ring finger and CCCH-type domains 1b. (1101 aa)
	ILK	Integrin-linked kinase. (452 aa)
	pdcd4	Programmed cell death 4b. (473 aa)
	LOC109525922	Nuclear factor of activated T cells 5b. (1240 aa)
	sash1	SAM and SH3 domain containing 1a. (1177 aa)
	LOC109517234	Uncharacterized protein. (775 aa)
	phb	Prohibitin. (271 aa)
	LOC109517076	Ring finger and CCCH-type domains 2. (1123 aa)
	trim44	Tripartite motif containing 44. (351 aa)
	ENSHCOP00000023065	Si:ch211-219a15.3. (318 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109521304	CTCK domain-containing protein. (129 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	eif2ak2	Uncharacterized protein. (609 aa)
	LOC109517673	Protein tyrosine phosphatase 4A3b. (171 aa)
	cunh20orf27	Si:ch211-74f19.2. (181 aa)
	ENSHCOP00000010767	Uncharacterized protein. (705 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (504 aa)
	LOC109507578	Nuclear factor of activated T cells 5a. (1448 aa)
	ENSHCOP00000006922	SCY domain-containing protein. (117 aa)
	GREM1	Gremlin; Belongs to the DAN family. (177 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GREM1	LOC109521304	ENSHCOP00000007216	ENSHCOP00000028041	Gremlin; Belongs to the DAN family.	CTCK domain-containing protein.	0.900
ILK	LOC109509738	ENSHCOP00000000462	ENSHCOP00000020094	Integrin-linked kinase.	Uncharacterized protein.	0.900
LOC109509738	ILK	ENSHCOP00000020094	ENSHCOP00000000462	Uncharacterized protein.	Integrin-linked kinase.	0.900
LOC109513432	nod2	ENSHCOP00000012063	ENSHCOP00000017302	Interleukin-1.	Nucleotide-binding oligomerization domain containing 2.	0.436
LOC109516853	LOC109517076	ENSHCOP00000022156	ENSHCOP00000001946	Ring finger and CCCH-type domains 1b.	Ring finger and CCCH-type domains 2.	0.631
LOC109517076	LOC109516853	ENSHCOP00000001946	ENSHCOP00000022156	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.631
LOC109521304	GREM1	ENSHCOP00000028041	ENSHCOP00000007216	CTCK domain-containing protein.	Gremlin; Belongs to the DAN family.	0.900
nod2	LOC109513432	ENSHCOP00000017302	ENSHCOP00000012063	Nucleotide-binding oligomerization domain containing 2.	Interleukin-1.	0.436