24 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ncoa7	TLDc domain-containing protein. (241 aa)
	ENSHCOP00000013336	Protein kinase domain-containing protein. (472 aa)
	nme5	NME/NM23 family member 5; Belongs to the NDK family. (254 aa)
	trap1	TNF receptor-associated protein 1. (719 aa)
	ENSHCOP00000006721	TLDc domain-containing protein. (193 aa)
	ENSHCOP00000006708	LysM domain-containing protein. (78 aa)
	LOC109526460	G protein-coupled receptor 37 like 1b. (462 aa)
	slc7a11	Solute carrier family 7 member 11. (493 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	gfer	Sulfhydryl oxidase. (190 aa)
	bag5	BCL2 associated athanogene 5. (579 aa)
	ENSHCOP00000027771	G_PROTEIN_RECEP_F1_2 domain-containing protein. (271 aa)
	LOC109530100	Si:ch73-352p4.8. (478 aa)
	LOC109518769	NME/NM23 family member 5. (208 aa)
	oxr1	Oxidation resistance 1. (837 aa)
	tsc1	TSC complex subunit 1b. (1217 aa)
	ENSHCOP00000013347	Uncharacterized protein. (1158 aa)
	hspb1	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family. (201 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (598 aa)
	il10	Uncharacterized protein. (236 aa)
	fbxo7	F-box protein 7. (443 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	LOC109525278	Uncharacterized protein. (1008 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000013336	ENSHCOP00000013347	ENSHCOP00000013336	ENSHCOP00000013347	Protein kinase domain-containing protein.	Uncharacterized protein.	0.945
ENSHCOP00000013347	ENSHCOP00000013336	ENSHCOP00000013347	ENSHCOP00000013336	Uncharacterized protein.	Protein kinase domain-containing protein.	0.945
LOC109525278	hspb1	ENSHCOP00000017204	ENSHCOP00000022950	Uncharacterized protein.	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	0.454
LOC109530100	slc7a11	ENSHCOP00000026717	ENSHCOP00000003918	Si:ch73-352p4.8.	Solute carrier family 7 member 11.	0.902
bag5	trap1	ENSHCOP00000000134	ENSHCOP00000006726	BCL2 associated athanogene 5.	TNF receptor-associated protein 1.	0.486
hspb1	LOC109525278	ENSHCOP00000022950	ENSHCOP00000017204	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	Uncharacterized protein.	0.454
hspb1	trap1	ENSHCOP00000022950	ENSHCOP00000006726	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	TNF receptor-associated protein 1.	0.475
hspb1	tsc1	ENSHCOP00000022950	ENSHCOP00000024378	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	TSC complex subunit 1b.	0.454
slc7a11	LOC109530100	ENSHCOP00000003918	ENSHCOP00000026717	Solute carrier family 7 member 11.	Si:ch73-352p4.8.	0.902
trap1	bag5	ENSHCOP00000006726	ENSHCOP00000000134	TNF receptor-associated protein 1.	BCL2 associated athanogene 5.	0.486
trap1	hspb1	ENSHCOP00000006726	ENSHCOP00000022950	TNF receptor-associated protein 1.	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	0.475
tsc1	hspb1	ENSHCOP00000024378	ENSHCOP00000022950	TSC complex subunit 1b.	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	0.454