11 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109522988	Uncharacterized protein. (418 aa)
	pkig	Protein kinase (cAMP-dependent, catalytic) inhibitor gamma. (96 aa)
	prkar2a	Protein kinase, cAMP-dependent, regulatory, type II, alpha A. (391 aa)
	LOC109522311	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B. (404 aa)
	prkar1b	Protein kinase, cAMP-dependent, regulatory, type I, beta. (382 aa)
	LOC109523155	Sirtuin 1. (657 aa)
	ENSHCOP00000019306	Sirtuin 1. (369 aa)
	ENSHCOP00000019285	Deacetylase sirtuin-type domain-containing protein. (166 aa)
	LOC109508583	Protein kinase cAMP-dependent type I regulatory subunit alpha. (376 aa)
	ENSHCOP00000026202	Uncharacterized protein. (79 aa)
	prkar1a	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b. (380 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000026202	pkig	ENSHCOP00000026202	ENSHCOP00000006656	Uncharacterized protein.	Protein kinase (cAMP-dependent, catalytic) inhibitor gamma.	0.682
LOC109508583	LOC109522311	ENSHCOP00000006717	ENSHCOP00000004553	Protein kinase cAMP-dependent type I regulatory subunit alpha.	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	0.906
LOC109508583	LOC109522988	ENSHCOP00000006717	ENSHCOP00000009388	Protein kinase cAMP-dependent type I regulatory subunit alpha.	Uncharacterized protein.	0.415
LOC109508583	prkar1a	ENSHCOP00000006717	ENSHCOP00000024364	Protein kinase cAMP-dependent type I regulatory subunit alpha.	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	0.900
LOC109508583	prkar1b	ENSHCOP00000006717	ENSHCOP00000003239	Protein kinase cAMP-dependent type I regulatory subunit alpha.	Protein kinase, cAMP-dependent, regulatory, type I, beta.	0.901
LOC109508583	prkar2a	ENSHCOP00000006717	ENSHCOP00000005712	Protein kinase cAMP-dependent type I regulatory subunit alpha.	Protein kinase, cAMP-dependent, regulatory, type II, alpha A.	0.908
LOC109522311	LOC109508583	ENSHCOP00000004553	ENSHCOP00000006717	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	Protein kinase cAMP-dependent type I regulatory subunit alpha.	0.906
LOC109522311	prkar1a	ENSHCOP00000004553	ENSHCOP00000024364	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	0.906
LOC109522311	prkar1b	ENSHCOP00000004553	ENSHCOP00000003239	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	Protein kinase, cAMP-dependent, regulatory, type I, beta.	0.906
LOC109522311	prkar2a	ENSHCOP00000004553	ENSHCOP00000005712	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	Protein kinase, cAMP-dependent, regulatory, type II, alpha A.	0.901
LOC109522988	LOC109508583	ENSHCOP00000009388	ENSHCOP00000006717	Uncharacterized protein.	Protein kinase cAMP-dependent type I regulatory subunit alpha.	0.415
LOC109522988	prkar1a	ENSHCOP00000009388	ENSHCOP00000024364	Uncharacterized protein.	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	0.416
LOC109522988	prkar1b	ENSHCOP00000009388	ENSHCOP00000003239	Uncharacterized protein.	Protein kinase, cAMP-dependent, regulatory, type I, beta.	0.415
LOC109522988	prkar2a	ENSHCOP00000009388	ENSHCOP00000005712	Uncharacterized protein.	Protein kinase, cAMP-dependent, regulatory, type II, alpha A.	0.403
pkig	ENSHCOP00000026202	ENSHCOP00000006656	ENSHCOP00000026202	Protein kinase (cAMP-dependent, catalytic) inhibitor gamma.	Uncharacterized protein.	0.682
prkar1a	LOC109508583	ENSHCOP00000024364	ENSHCOP00000006717	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	Protein kinase cAMP-dependent type I regulatory subunit alpha.	0.900
prkar1a	LOC109522311	ENSHCOP00000024364	ENSHCOP00000004553	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.	0.906
prkar1a	LOC109522988	ENSHCOP00000024364	ENSHCOP00000009388	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	Uncharacterized protein.	0.416
prkar1a	prkar1b	ENSHCOP00000024364	ENSHCOP00000003239	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	Protein kinase, cAMP-dependent, regulatory, type I, beta.	0.900
prkar1a	prkar2a	ENSHCOP00000024364	ENSHCOP00000005712	Protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b.	Protein kinase, cAMP-dependent, regulatory, type II, alpha A.	0.908